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| Status |
Public on Feb 10, 2021 |
| Title |
Integrative analysis of liver-specific noncoding regulatory variants associated with the risk of coronary artery disease |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We performed promoter Capture Hi-C in HepG2 to investigate interactions between gene promoters and distal elements as a transcription-regulating mechanism contributing to these phenotypes. We also performed ChIP-Seq at 2h, 8h and 23h timepoints in HepG2 for Il1B treatment.
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| Overall design |
Promoter Capture Hi-C and Chip-Seq library was produced from HepG2
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| |
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| Contributor(s) |
Selvarajan I, Garske KM, Liu OH, Pajukanta P, Kaikkonen MU |
| Citation(s) |
33626337 |
| |
| Submission date |
Sep 01, 2020 |
| Last update date |
May 12, 2021 |
| Contact name |
Minna U Kaikkonen |
| E-mail(s) |
minna.kaikkonen@uef.fi
|
| Organization name |
A.I.Virtanen Institute for Molecular Sciences
|
| Street address |
Neulaniementie 2
|
| City |
Kuopio |
| ZIP/Postal code |
70211 |
| Country |
Finland |
| |
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| Platforms (2) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
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| Samples (10)
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| Relations |
| BioProject |
PRJNA660797 |
| SRA |
SRP279651 |
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