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Series GSE157716 Query DataSets for GSE157716
Status Public on Jun 02, 2021
Title HDAC1 paces the temporal expression of morphogenic genes during axolotl limb regeneration
Organism Ambystoma mexicanum
Experiment type Expression profiling by high throughput sequencing
Summary These data provide an important, detailed molecular resource that outlines and defines injury repair and regeneration stage-dependent genes and cellular composition orchestrated by wound healing and blastema stage-associated HDAC activity, which enhances our understanding of this complex limb regeneration process.
 
Overall design RNA were extracted from axotol tissues (wound epidermis and soft tissues) after amputation with DMSO and MS-275, respectively.
 
Contributor(s) Wang MH, Lee HS, Lin SP
Citation(s) 34041236
Submission date Sep 09, 2020
Last update date Jun 02, 2021
Contact name Chia-Lang Hsu
E-mail(s) chialanghsu@ntuh.gov.tw
Organization name National Taiwan University Hospital
Department Department of Medical Research
Street address No. 7, Zhongshan S. Rd.
City Taipei
ZIP/Postal code 100
Country Taiwan
 
Platforms (1)
GPL27159 Illumina NovaSeq 6000 (Ambystoma mexicanum)
Samples (20)
GSM4773653 WE control at D0 (rep1)
GSM4773654 ST control at D0 (rep1)
GSM4773655 WE with MS-275 at D3 (rep1)
Relations
BioProject PRJNA662554
SRA SRP281856

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE157716_transcript_TPM.txt.gz 3.8 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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