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Series GSE15802 Query DataSets for GSE15802
Status Public on Dec 15, 2010
Title Identification of new markers of cutaneous melanoma invasion
Organism Homo sapiens
Experiment type Expression profiling by array
Summary T1C3 is a clonal cell line from a human melanoma tumor, expressing PNA lectin, and characterized by a high capacity of dermal invasion.
IC8 is a clonal cell line from a human melanoma tumor, negative for PNA lectin, and non-invasive.
To identify new gene markers involved in the mechanisms of early invasion, oligonuclotide microarrays were used to assess transcriptional chnages between the two cell lines.
 
Overall design Dye-swap hybridization were performed. Slides were scanned with a Genepix 4000 microarray scanner (Axon Instruments, Molecular devices, Sunnyvale, CA). For each hybridized spot, the Cy3 and Cy5 fluorescence values were obtained by using Genepix Pro 4.0 software (Axon Instruments) and were saved as a result file.
 
Contributor(s) Lamartine J, Berthier O, El Kharbili M, Casu L, Gidrol X, Amiot F
Citation(s) 21081927
Submission date Apr 23, 2009
Last update date Mar 21, 2012
Contact name Jerome Lamartine
E-mail(s) jerome.lamartine@univ-lyon1.fr
Phone +33 4 72 72 26 66
Organization name Université Lyon I
Lab LBTI
Street address 7 passage du Vercors
City LYON
ZIP/Postal code F69367
Country France
 
Platforms (1)
GPL4803 CEA - DSV/DRR/SGF : Human 25k oligo v1.0
Samples (4)
GSM396557 T1C3 vs IC8 melanoma cell line
GSM396558 T1C3 vs IC8 melanoma cell line swap
GSM396559 T1C3 vs IC8 melanoma cell line swap2
Relations
BioProject PRJNA116829

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE15802_RAW.tar 10.9 Mb (http)(custom) TAR (of GPR)
Processed data included within Sample table

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