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Series GSE158026 Query DataSets for GSE158026
Status Public on Dec 01, 2021
Title Microbial regulation of hexokinase 2 links mitochondrial metabolism and cell death in colitis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Hexokinases (HK) catalyze the first step of glycolysis and thereby limit its pace. HK2 is highly expressed in the gut epithelium, plays a role in immune responses and is upregulated in inflammation and ulcerative colitis 1-3. Here, we examined the microbial regulation of HK2 and its impact on intestinal inflammation by generating mice lacking HK2 specifically in intestinal epithelial cells (Hk2∆IEC). Hk2∆IEC mice were less susceptible to acute intestinal inflammation upon challenge with dextran sodium sulfate (DSS). Analyzing the epithelial transcriptome from Hk2∆IEC mice during acute colitis revealed downregulation of cell death signaling and mitochondrial dysfunction dependent on loss of HK2. Using intestinal organoids derived from Hk2∆IEC mice and Caco-2 cells lacking HK2, we identified peptidyl-prolyl cis-trans isomerase (PPIF) as a key target of HK2-mediated regulation of mitochondrial permeability and repression of cell-death during intestinal inflammation. The microbiota strongly regulated HK2 expression and activity. The microbially-derived short-chain fatty acid (SCFA) butyrate repressed HK2 expression and oral supplementation protected wildtype but not Hk2∆IEC mice from DSS colitis. Our findings define a novel mechanism how butyrate may act as a protective factor for intestinal barrier homeostasis and suggest targeted HK2 inhibition as a promising therapeutic avenue in intestinal inflammation. 
 
Overall design RNA-seq of colon tissue of WT and Hk2∆IEC mice at days 0, 3 and 7 during DSS colitis
 
Contributor(s) Sommer F, Hamm J, Hinrichsen F, Mishra N, Rosenstiel P
Citation(s) 34847376
Submission date Sep 16, 2020
Last update date Dec 08, 2021
Contact name Neha Mishra
E-mail(s) n.mishra@ikmb.uni-kiel.de
Organization name Institute of Clinical Molecular Biology
Lab Cell biology Lab
Street address Rosalind-Franklin-Str. 12
City Kiel
ZIP/Postal code 24105
Country Germany
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (38)
GSM4785432 d3_KO_345
GSM4785433 d3_WT_346
GSM4785434 d3_WT_348
Relations
BioProject PRJNA663789
SRA SRP282566

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE158026_RAW.tar 255.4 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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