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Series GSE158098 Query DataSets for GSE158098
Status Public on Jan 14, 2022
Title Redundant mechanisms driven independently by RUNX1 and GATA2 for hematopoietic development
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary Here we used RNA sequencing to characterize the transcriptional profile of the kidney of runx1 knock out zebrafish adult compared to wild type.
 
Overall design Bulk RNA-seq was performed on surgically dissected kidneys from wild type and runx1-/- siblings (~2.5 months old, pool of 3 kidneys/replicate, n= 3 for each genotype).
Web link https://pubmed.ncbi.nlm.nih.gov/34492681/
 
Contributor(s) Bresciani E, Kwon E, Yu K, dell'Orso S
Citation(s) 34492681
Submission date Sep 16, 2020
Last update date Jan 16, 2022
Contact name Kai Yu
E-mail(s) kai.yu@nih.gov
Organization name NHGRI
Street address 50 South Drive, Bldg 50, Room 5151
City Bethesda
State/province Maryland
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL18413 Illumina HiSeq 2500 (Danio rerio)
Samples (6)
GSM4792202 WT kidney1
GSM4792203 WT kidney2
GSM4792204 WT kidney3
This SubSeries is part of SuperSeries:
GSE158101 Redundant mechanisms driven independently by RUNX1 and GATA2 for hematopoietic development
Relations
BioProject PRJNA663959
SRA SRP282671

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE158098_RAW.tar 860.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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