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Series GSE158664 Query DataSets for GSE158664
Status Public on Sep 29, 2020
Title Identification of genes with different expression in wild- and half-size Xenopus laevis embryos by transcriptome comparison
Organism Xenopus laevis
Experiment type Expression profiling by high throughput sequencing
Summary To identify genes with different expression levels in Xenopus laevis embryos of different sizes, RNAseq of middle gastrula RNA of the wild-size and artificially prepared half-size embryos was done. As a result, several genes with drastically different expression between these two types of embryos were found.
 
Overall design Three biological replicates were analyzed for 2 conditions (intact embryos vs their siblings divided at two-blastomere stage)
Web link https://doi.org/10.1016/j.devcel.2021.11.021
 
Contributor(s) Orlov E, Zaraisky A
Citation(s)
  • Orlov EE, Nesterenko AM, Korotkova DD, Parshina EA et al. Targeted search for scaling genes reveals matrixmetalloproteinase 3 as a scaler of the dorsal-ventral pattern in Xenopus laevis embryos. Dev Cell 2022 Jan 10;57(1):95-111.e12. PMID: 34919801
Submission date Sep 28, 2020
Last update date Jul 14, 2022
Contact name Evgeny E Orlov
E-mail(s) Orlov_evgeny@yahoo.com
Organization name Shemyakin-Ovchinnikov Institute of Bioorganic Chemstry, RAS
Department Department of Genomics and Postgenomic Technologies
Lab Laboratory of molecular bases of embryogenesis
Street address Miklukho-Maklaya 16/10
City Moscow
ZIP/Postal code 117997
Country Russia
 
Platforms (1)
GPL18936 Illumina HiSeq 2500 (Xenopus laevis)
Samples (6)
GSM4805183 Twinned siblings from rep1
GSM4805184 Twinned siblings from rep2
GSM4805185 Twinned siblings from rep3
Relations
BioProject PRJNA666158
SRA SRP285632

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE158664_Xla_DESeq_full_table.csv.gz 1.1 Mb (ftp)(http) CSV
GSE158664_Xla_gene.count.txt.gz 430.5 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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