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| Status |
Public on Sep 30, 2020 |
| Title |
Low read depth whole genome sequencing of mouse Cre-loxP-induced Ewsr1-Atf1 translocation tumors |
| Organism |
Mus musculus |
| Experiment type |
Other
|
| Summary |
Mice formed tumors either after an Hprt-Cre-initiated translocation between Ewsr1 and Atf1 genes on chromosomes 11 and 15. From tumor genomic DNA, libraries were generated and sequenced on an Ilumina NovaSeq instrument to measure copy number variation.
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| Overall design |
low read depth whole genome sequencing of mouse Cre-loxP-induced Ewsr1-Atf1 translocation tumors for copy number analysis
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| |
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| Contributor(s) |
Jones K |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Sep 29, 2020 |
| Last update date |
Oct 02, 2020 |
| Contact name |
Jinxiu Li |
| Organization name |
China Agricutural University
|
| Department |
College of biological sciences
|
| Lab |
State key laboratories of Agrobiotechnology
|
| Street address |
Yuanmingyuan west road 2#
|
| City |
Beijing |
| State/province |
Beijing |
| ZIP/Postal code |
100193 |
| Country |
China |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (5)
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| This SubSeries is part of SuperSeries: |
| GSE158726 |
Cre-loxP-induced Ewsr1-Atf1 translocation tumors |
|
| Relations |
| BioProject |
PRJNA666359 |
| SRA |
SRP285764 |
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