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Series GSE158775 Query DataSets for GSE158775
Status Public on Oct 26, 2021
Title Bulk RNA sequencing of airway organoids in differentiation medium towards ciliated cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Bulk RNA sequencing was performed on 3D airway cultures in airway organoid expansion medium and differentiation medium (CilM)
 
Overall design RNA was extracted from 3D airway organoids cultures that were either grown in expansion conditions (AO) or differentiation conditions (CilM) for 21 days. After this, RNA was collected.
 
Contributor(s) van der Vaart J, Böttinger L, Sachs N, Begthel H, Korving J, Viveen M, Eitan K, Gilleles-Hillel A, Clevers H
Citation(s) 34693619
Submission date Sep 29, 2020
Last update date Oct 27, 2021
Contact name Jelte van der Vaart
E-mail(s) j.vaart@hubrecht.eu
Organization name Hubrecht Institute
Lab dr. Hans Clevers Lab
Street address Uppsalalaan 8
City Utrecht
ZIP/Postal code 3584CT
Country Netherlands
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (6)
GSM4810330 hsLung108-PCD4_AO
GSM4810331 hsLung108-PCD4_CilM
GSM4810332 hsLung111-PCD6_AO
Relations
BioProject PRJNA666459
SRA SRP285828

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE158775_AOvsCilM_ndata.txt.gz 543.7 Kb (ftp)(http) TXT
GSE158775_AOvsCilM_rawcounts.txt.gz 410.5 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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