NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE158845 Query DataSets for GSE158845
Status Public on Dec 31, 2020
Title Gene expression of H. parainfluenzae in monoculture and coculture with S. mitis
Organisms Haemophilus parainfluenzae; Streptococcus mitis
Experiment type Expression profiling by high throughput sequencing
Summary Identify DEGs in H. parainfluenzae in monoculture vs coculture with S. mitis aerobically on BHI-YE HP at 37.C and 5% CO2
 
Overall design Gene expression of H. parainfluenzae in monoculture and coculture with S. mitis, 2 reps for each condition
 
Contributor(s) Perera D
Citation(s) 34732850
Submission date Sep 30, 2020
Last update date Apr 19, 2022
Contact name Dasith Perera
E-mail(s) dasithperera89@gmail.com
Organization name University of Rhode Island
Street address Flagg Rd
City Kingston
State/province Rhode Island
ZIP/Postal code 02881
Country USA
 
Platforms (2)
GPL29207 Illumina HiSeq 2500 (Haemophilus parainfluenzae)
GPL29208 Illumina HiSeq 2500 (Haemophilus parainfluenzae; Streptococcus mitis)
Samples (4)
GSM4812004 H. parainfluenzae monoculture rep1
GSM4812005 H. parainfluenzae monoculture rep2
GSM4812006 H. parainfluenzae coculture with S. mitis rep1
Relations
BioProject PRJNA666682
SRA SRP285943

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE158845_hpara.fa.gz 646.0 Kb (ftp)(http) FA
GSE158845_hpara.faa.gz 385.4 Kb (ftp)(http) FAA
GSE158845_hpara.gff.gz 56.2 Kb (ftp)(http) GFF
GSE158845_raw_deseqtable.csv.gz 115.9 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap
External link. Please review our privacy policy.