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Series GSE158989 Query DataSets for GSE158989
Status Public on Oct 19, 2020
Title Interepithelial inflammatory crosstalk mediated by stromal fibroblast communication through hyaluronan [dataset 2]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Inflammation of epithelial structures frequently leads to disease at distal organs, but the mechanism responsible for this is unknown. We report evidence that digestion of hyaluronan in the extracellular matrix signals distal stromal cells to become primed for increased inflammation. By applying transgenic mouse models and single cell RNA sequencing of mouse and human tissues we demonstrate that skin injury or infection promotes an adipogenic response in distinct populations of distant submucosal fibroblasts of the colon. This response can be recapitulated without skin inflammation by expression of hyaluronidase in skin that promotes a highly amplified and frequently fatal host response to intestinal injury. Our results uncover an innate system of communication between epithelial stroma that is not initiated by immunocyte trafficking or cytokine signaling.
 
Overall design RNA-seq of mouse colon lamina propria
 
Contributor(s) Dokoshi T, Gallo RL
Citation(s) 34720087
Submission date Oct 04, 2020
Last update date Jan 06, 2022
Contact name Jason Samuel Seidman
E-mail(s) jseidman@ucsd.edu
Phone 6507763250
Organization name University of California San Diego
Department Cellular and Molecular Medicine
Lab Christopher K Glass
Street address 9500 Gilman Drive, Mail code 0651
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (2)
GSM4816950 Control1_colon
GSM4816951 K14_hyal1_colon
This SubSeries is part of SuperSeries:
GSE159509 Interepithelial inflammatory crosstalk mediated by stromal fibroblast communication through hyaluronan
Relations
BioProject PRJNA667261
SRA SRP286305

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE158989_normalized_counts.xls.gz 2.0 Mb (ftp)(http) XLS
GSE158989_processed_data1.xlsx 1.5 Mb (ftp)(http) XLSX
GSE158989_processed_data_file.xlsx 1.2 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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