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| Status |
Public on Oct 13, 2021 |
| Title |
A comparison of alternative mRNA splicing in the CD4 and CD8 T cell lineages |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We consturcted a full-length transcript reference of CD4SP and CD8SP T cells using TGS (PacBio) data. We then used SGS (Illumina) CD4SP and CD8SP data to quantify isoform expressions and study alternative splicing patterns against the full-length transcript reference between CD4SP and CD8SP cells.
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| Overall design |
Constructed full-length trasncript reference and analysed alternative splicing events in CD4SP and CD8SP T cells with TGS (PacBio) long-read and SGS (Illumina) short-read data. PacBio long-read and Illumina short-read libraries were constructed for CD4SP and CD8SP cells.
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| Contributor(s) |
Chong MM |
| Citation(s) |
33631555 |
| |
| Submission date |
Oct 09, 2020 |
| Last update date |
Oct 15, 2021 |
| Contact name |
Mark Chong |
| E-mail(s) |
mchong@svi.edu.au
|
| Phone |
61-3-92313444
|
| Organization name |
St Vincent's Institute of Medical Research
|
| Street address |
9 Princes Street
|
| City |
Fitzroy |
| State/province |
Victoria |
| ZIP/Postal code |
3065 |
| Country |
Australia |
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| Platforms (2) |
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| Samples (10)
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| Relations |
| BioProject |
PRJNA668300 |
| SRA |
SRP286871 |
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