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Series GSE159396 Query DataSets for GSE159396
Status Public on Feb 22, 2021
Title DNA methylome of Canis lupus basenji
Organism Canis lupus
Experiment type Methylation profiling by high throughput sequencing
Summary Using WGBS we investigated blood DNA methylation profiles of Canis lupus basenji and determined putative regulatory elements (unmethlated regions, UMRs, and lowly methylated regions, LMRs).
 
Overall design Whole genome bisulphite sequencing of basenji's blood DNA
 
Contributor(s) Skvortsova K, Bogdanovic O
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Oct 12, 2020
Last update date Feb 24, 2021
Contact name Ksenia Skvortsova
E-mail(s) k.skvortsova@garvan.org.au
Phone 478135210
Organization name Garvan Institute
Department Genomics and Epigenetics
Lab Developmental Epigenomics
Street address 384 Victoria St, Darlinghurst
City Sydney
State/province NSW
ZIP/Postal code 2010
Country Australia
 
Platforms (1)
GPL29242 HiSeq X Ten (Canis lupus)
Samples (1)
GSM4828876 Basenji_blood_WGBS
Relations
BioProject PRJNA668779
SRA SRP287146

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE159396_RAW.tar 185.8 Mb (http)(custom) TAR (of BEDGRAPH)
GSE159396_bigtable.tsv.gz 24.4 Mb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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