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Series GSE159545 Query DataSets for GSE159545
Status Public on Jan 31, 2021
Title Copper Availability Influences the Transcriptomic Response of C. albicans to Fluconazole Stress
Organism Candida albicans
Experiment type Expression profiling by high throughput sequencing
Summary We used whole transcriptome profiling (RNA-seq) to analyze the effects of Cu availability on the transcriptomic response of Candida albicans to the azole antifungal drug fluconazole. This study provides a framework for understanding how two treatments work in concert to generate unique impacts on stress response mechanisms of pathogenic fungi.
 
Overall design Examination of Candida albicans cells treated with fluconazole under basal and elevated (10 µM) Cu conditions.
 
Contributor(s) Hunsaker EW, Yu C, Franz KJ
Citation(s) 33693623
Submission date Oct 19, 2020
Last update date Apr 28, 2021
Contact name Katherine J. Franz
E-mail(s) katherine.franz@duke.edu
Phone 9196601541
Organization name Duke University
Department Chemistry
Street address 2103 French Science Center, 124 Science Dr., Box 90346
City Durham
State/province NC
ZIP/Postal code 27708-0346
Country USA
 
Platforms (1)
GPL28323 Illumina NovaSeq 6000 (Candida albicans)
Samples (75)
GSM4832261 0 h_untreated_rep1
GSM4832262 0 h_untreated_rep2
GSM4832263 0 h_untreated_rep3
Relations
BioProject PRJNA669679
SRA SRP287539

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE159545_Processed_data_Hunsaker.xlsx 8.4 Mb (ftp)(http) XLSX
GSE159545_RAW.tar 8.0 Mb (http)(custom) TAR (of TXT)
GSE159545_Raw_gene_counts_matrix.tsv.gz 704.5 Kb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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