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Series GSE15955 Query DataSets for GSE15955
Status Public on May 08, 2009
Title Expression data from colon epithelium of STAT3IEC-KO in acute DSS colitis
Organism Mus musculus
Experiment type Expression profiling by array
Summary STAT3 is a pleiotropic transcription factor with important functions in cytokine signalling in a variety of tissues. However, the role of STAT3 in the intestinal epithelium is not well understood. Here we demonstrate that development of colonic inflammation is associated with the induction of STAT3 activity in intestinal epithelial cells (IEC). Studies in genetically engineered mice showed that epithelial STAT3 activation in DSS colitis is dependent on IL-22 rather than IL-6. IL-22 was secreted by colonic CD11c+ cells in response to Toll-like receptor stimulation. Conditional knockout mice with an IEC specific deletion of STAT3 activity were highly susceptible to experimental colitis, indicating that epithelial STAT3 regulates gut homeostasis. STAT3IEC-KO mice, upon induction of colitis, showed a striking defect of epithelial restitution. Gene chip analysis indicated that STAT3 regulates the cellular stress response, apoptosis and pathways associated with wound healing in IEC. Consistently, both IL-22 and epithelial STAT3 were found to be important in wound-healing experiments in vivo. In summary, our data suggest that intestinal epithelial STAT3 activation regulates immune homeostasis in the gut by promoting IL-22-dependent mucosal wound healing.
 
Overall design 4 samples of colon epithelium were analyzed from 4 mice (2 per group Stat3flfl VillinCre- and Stat3flfl VillinCre+, respectively) after they had been treated with DSS (2.5%) for 5 days
 
Contributor(s) Neufert C, Becker C, Pickert G, Nikolaev A, Neurath MF
Citation(s) 19564350
Submission date May 05, 2009
Last update date Feb 11, 2019
Contact name Clemens Neufert
Organization name Friedrich-Alexander-University Erlangen-Nürnberg
Department First Department of Medicine
Street address Ulmenweg 18
City Erlangen
ZIP/Postal code 91054
Country Germany
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (4)
GSM400149 Colon epithelium, Stat3flfl VilCre-, biolrep1
GSM400150 Colon epithelium, Stat3flfl VilCre+, biolrep1
GSM400151 Colon epithelium, Stat3flfl VilCre-, biolrep2
Relations
BioProject PRJNA115359

Fold change header descriptions
ID_REF
regulation ([Cre+] vs [Cre-])
FCAbsolute ([Cre+] vs [Cre-])
pvalue ([Cre+] vs [Cre-])

Data table
ID_REF regulation ([Cre+] vs [Cre-]) FCAbsolute ([Cre+] vs [Cre-]) pvalue ([Cre+] vs [Cre-])
1451612_at up 21.91 0.0179
1416297_s_at down 21.02 0.0491
1420747_at up 10.44 0.0414
1448872_at down 9.61 0.0573
1417290_at down 9.16 0.0862
1459409_at up 9.00 0.1034
1439276_at up 7.52 0.0569
1442632_at up 7.36 0.0218
1436631_at up 7.36 0.1091
1448290_at down 7.11 0.0314
1456547_at up 6.96 0.0007
1459560_at up 6.89 0.0676
1458899_at up 6.75 0.1282
1436767_at up 6.63 0.1484
1440977_at up 6.56 0.1837
1456593_at up 6.32 0.1087
1449984_at up 6.08 0.3807
1425546_a_at down 6.06 0.0668
1439161_at up 6.06 0.0586
1425329_a_at down 5.93 0.4178

Total number of rows: 45101

Table truncated, full table size 1228 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE15955_RAW.tar 14.4 Mb (http)(custom) TAR (of CEL)
GSE15955_baseline_transform.txt.gz 818.2 Kb (ftp)(http) TXT
Processed data included within Sample table

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