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Series GSE160462 Query DataSets for GSE160462
Status Public on Jun 03, 2021
Title PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (ChIP-seq)
Organism Strongylocentrotus purpuratus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary PRO-seq, ATAC-seq, and Pol II ChIP-seq signals are used to predict active developmental enhancers.
 
Overall design Machine learning models are trained and tested wit the different epigenetic marks for the prediction of genomic with active reporter gene activity.
 
Contributor(s) Ercan S, Arenas-Mena C
Citation(s) 34666684
Submission date Oct 29, 2020
Last update date Jun 01, 2023
Contact name Cesar Arenas-Mena
E-mail(s) cesar.arenasmena@csi.cuny.edu
Organization name CSI CUNY
Department Biology
Street address 2800 Victory Boulevard
City Staten Island
State/province New York
ZIP/Postal code 10314
Country USA
 
Platforms (1)
GPL20965 Illumina HiSeq 2500 (Strongylocentrotus purpuratus)
Samples (6)
GSM4873708 8WG16_ab817_SeaUrchin_emb_Ext 210
GSM4873709 8WG16_ab817_SeaUrchin_emb_Ext 211
GSM4873710 8WG16_ab817_SeaUrchin_embryos_Ext 179
This SubSeries is part of SuperSeries:
GSE160463 PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos
Relations
BioProject PRJNA673238
SRA SRP289841

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE160462_CHIP_SOR_TED.bed.gz 3.9 Mb (ftp)(http) BED
GSE160462_PolII_SE355_SE356_LW228_MERGED_SORTED.bw 152.1 Mb (ftp)(http) BW
GSE160462_RAW.tar 141.2 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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