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Status |
Public on Jun 03, 2021 |
Title |
PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (ChIP-seq) |
Organism |
Strongylocentrotus purpuratus |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
Summary |
PRO-seq, ATAC-seq, and Pol II ChIP-seq signals are used to predict active developmental enhancers.
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Overall design |
Machine learning models are trained and tested wit the different epigenetic marks for the prediction of genomic with active reporter gene activity.
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Contributor(s) |
Ercan S, Arenas-Mena C |
Citation(s) |
34666684 |
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Submission date |
Oct 29, 2020 |
Last update date |
Jun 01, 2023 |
Contact name |
Cesar Arenas-Mena |
E-mail(s) |
cesar.arenasmena@csi.cuny.edu
|
Organization name |
CSI CUNY
|
Department |
Biology
|
Street address |
2800 Victory Boulevard
|
City |
Staten Island |
State/province |
New York |
ZIP/Postal code |
10314 |
Country |
USA |
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Platforms (1) |
GPL20965 |
Illumina HiSeq 2500 (Strongylocentrotus purpuratus) |
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Samples (6)
|
GSM4873711 |
Input-corr-ChIP 643__SeaUrchin_emb_Ext 210 |
GSM4873712 |
Input-corr-ChIP 644__SeaUrchin_emb_Ext 211 |
GSM4873713 |
Input__SeaUrchin_embryos_Ext 179 |
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This SubSeries is part of SuperSeries: |
GSE160463 |
PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos |
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Relations |
BioProject |
PRJNA673238 |
SRA |
SRP289841 |