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Series GSE160992 Query DataSets for GSE160992
Status Public on May 11, 2021
Title MicroRNAs involved in regeneration of adult zebrafish brain.
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary For its remarkable ability to heal injuries of the adult central nervous system, the zebrafish has become an important model to investigate neural regeneration. Despite big progresses in our understanding of some of the underlying key processes, a comprehensive analysis of the changes of the transcriptome has not been reported yet. We analysed here the transcriptome of the regenerating telencephalon for changes in the expression of microRNAs and their putative targets.
 
Overall design small RNA sequencing of injured and control adult zebrafish telencephalic hemisphere
 
Contributor(s) Gourain V, Armant O, Straehle U
Citation(s)
  • Gourain V, Armant O, Lübke L, Diotel N et al. Multi-Dimensional Transcriptome Analysis Reveals Modulation of Cholesterol Metabolism as Highly Integrated Response to Brain Injury. Front Neurosci 2021;15:671249. PMID: 34054419
  • Lübke L, Zhang G, Strähle U, Rastegar S. mdka Expression Is Associated with Quiescent Neural Stem Cells during Constitutive and Reactive Neurogenesis in the Adult Zebrafish Telencephalon. Brain Sci 2022 Feb 18;12(2). PMID: 35204047
Submission date Nov 06, 2020
Last update date Mar 04, 2022
Contact name Victor GOURAIN
Organization name Centre de recherche en transplantation et immunologie
Department UMR1064
Street address 30 Bd Jean Monnet
City Nantes
ZIP/Postal code 44093
Country France
 
Platforms (1)
GPL18171 Illumina HiSeq 1500 (Danio rerio)
Samples (6)
GSM4887524 healthy telencephalic hemisphere 1
GSM4887525 healthy telencephalic hemisphere 2
GSM4887526 healthy telencephalic hemisphere 3
Relations
BioProject PRJNA675087
SRA SRP291443

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE160992_RAW.tar 20.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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