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Series GSE161192 Query DataSets for GSE161192
Status Public on Sep 14, 2021
Title CD4+ T cells contribute to neurodgeneration in Lewy Body dementia
Organism Homo sapiens
Experiment type Other
Expression profiling by high throughput sequencing
Summary Recent studies indicate a role of the adaptive immune system in Lewy body dementia (LBD). However, the mechanisms regulating T cell brain homing in LBD remain unknown. Here, we demonstrate interaction of T cells with Lewy bodies and with dopaminergic neurons in post-mortem LBD brains. Single cell RNA sequencing of cerebrospinal fluid (CSF) cells identified upregulated expression of C-X-C Motif Chemokine Receptor 4 (CXCR4) in CD4+ T cells in LBD. CSF protein levels of the CXCR4 ligand, C-X-C Motif Chemokine Ligand 12 (CXCL12) were associated with neuroaxonal damage in LBD. Finally, we demonstrate clonal expansion and upregulated Interleukin 17A by CD4+ T cells stimulated with phosphorylated α-synuclein. Cumulatively, these results indicate CXCR4-CXCL12 signaling as a mechanistic target for inhibiting pathological T cell trafficking in LBD.
 
Overall design Examination of transcriptional profile of cells from the cerbrospinal fluid of healthy and diseased patients
 
Contributor(s) David G, Emma T
Citation(s) 34648304
Submission date Nov 10, 2020
Last update date Feb 15, 2024
Contact name Emma Tapp
E-mail(s) etapp@stanford.edu, dgate@stanford.edu
Organization name Stanford University
Department Neurology
Lab Wyss-Coray
Street address 290 Jane Stanford Way
City Stanford
State/province California (CA)
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (8)
GSM4891327 Patient1U_TCR
GSM4891328 Patient1S_TCR
GSM4891329 Patient2U_TCR
Relations
BioProject PRJNA675845
SRA SRP292005

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE161192_RAW.tar 165.7 Mb (http)(custom) TAR (of CSV, ZIP)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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