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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 12, 2020 |
| Title |
Co-location of chromatin loop anchors with the gene transcription machinery in maize. |
| Organism |
Zea mays |
| Experiment type |
Other
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| Summary |
We report the use of ultra-high Hi-C sequencing to characterize TAD-like domains and chromatin loops in maize, along with their co-location characteristics with open chromatin (ATAC-Seq) peaks and gene expreesion (mRNA-Seq) data generated from the same tissue samples.
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| Overall design |
Examination of two distinct B73 leaf v04 biological replicates
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| Contributor(s) |
Deschamps S, Crow JA, Chaidir N, Peterson-Burch B, Kumar S, Lin H, Zastrow-Hayes G, May GD |
| Citation(s) |
33407087 |
| BioProject |
PRJNA647026 |
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| Submission date |
Nov 11, 2020 |
| Last update date |
Jan 11, 2021 |
| Contact name |
John Anthony Crow |
| E-mail(s) |
johna.crow@corteva.com
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| Organization name |
Corteva Agriscience
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| Department |
Applied Science and Technology
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| Lab |
Genomics Technologies
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| Street address |
7000 NW 62nd Ave
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| City |
Johnston |
| State/province |
Iowa |
| ZIP/Postal code |
50131 |
| Country |
USA |
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| Platforms (1) |
| GPL29401 |
Illumina Novaseq 6000 (Zea mays) |
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| Samples (2) |
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| Relations |
| SRA |
SRP272433 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE161294_RAW.tar |
8.5 Gb |
(http)(custom) |
TAR (of BEDPE, HIC, TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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