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Series GSE161476 Query DataSets for GSE161476
Status Public on Dec 08, 2020
Title A longitudinal and transancestral analysis of DNA methylation patterns and disease activity in lupus patients
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Epigenetic dysregulation is implicated in the pathogenesis of lupus. We performed a longitudinal analysis to assess changes in DNA methylation in neutrophils collected from 54 lupus patients over 4 years of follow up and across disease activity levels using 229 patient samples.
 
Overall design Illumina Infinium MethylationEPIC array of genomic DNA from neutrophils extracted from whole blood from 54 systemic lupus erythematosus (SLE) patients over time for a total of 229 timepoints.
 
Contributor(s) Sawalha AH, Coit P
Citation(s) 33108347
Submission date Nov 13, 2020
Last update date Dec 08, 2020
Contact name Amr Sawalha
E-mail(s) asawalha@pitt.edu
Organization name University of Pittsburgh
Street address 4401 Penn Avenue
City Pittsburgh
State/province PA
ZIP/Postal code 15224
Country USA
 
Platforms (1)
GPL21145 Infinium MethylationEPIC
Samples (229)
GSM4907592 SLE_P2_T5
GSM4907593 SLE_P2_T2
GSM4907594 SLE_P2_T0
Relations
BioProject PRJNA678368

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE161476_RAW.tar 3.3 Gb (http)(custom) TAR (of IDAT)
Processed data included within Sample table

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