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Series GSE162404 Query DataSets for GSE162404
Status Public on Jul 26, 2021
Title Revealing the molecular mechanism of mouse innate behavior by single-cell sequencing
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Innate behaviors, like fear, are basic behaviors which animals possess to ensure their survival and reproduction. Now we know that in animals, for example mouse, different behaviors are controlled by different or similar neural circuits. Whether these behaviors are coded by specific genes are not clear. In this project, we used single-cell sequencing to solve this problem in fear and hunting behaviors.
 
Overall design single cell RNA-seq of the superior colliculus of the adult mouse
 
Contributor(s) Liu Z, Wang M, Wu Q, Wang X, Wang X, Wu Q
Citation(s)
  • Xie Z, Wang M, Liu Z, Shang C et al. Transcriptomic encoding of sensorimotor transformation in the midbrain. Elife 2021 Jul 28;10. PMID: 34318750
Submission date Dec 01, 2020
Last update date Aug 18, 2021
Contact name Zeyuan Liu
Organization name Institute of Biophysics,Chinese Academy of Sciences
Street address 15 Datun Road, Chaoyang District, Beijing, 100101, China
City Beijing
ZIP/Postal code 100101
Country China
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (62)
GSM4951054 cell01
GSM4951055 cell02
GSM4951056 cell03
Relations
BioProject PRJNA681789
SRA SRP295308

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE162404_barcodes.tsv.gz 74.8 Kb (ftp)(http) TSV
GSE162404_features.tsv.gz 244.7 Kb (ftp)(http) TSV
GSE162404_matrix.mtx.gz 142.5 Mb (ftp)(http) MTX
GSE162404_smart-seq-raw-counts-for-geo.txt.gz 872.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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