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Series GSE162492 Query DataSets for GSE162492
Status Public on Dec 02, 2023
Title ChIP-seq in Calu3 cells upon SARS-CoV2 infection
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary This study addresses the question how host cells transcriptionally respond to SARS-CoV2 infection.
Overall design Calu3 cells were infected with Influenza or SARS CoV-2 virus for various time points before harvesting them for RNA and chromatin profiling.
Contributor(s) Weigang S, Kochs G, Schwemmle M, Rawat P, Hummel B, Sawarkar R
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Submission date Dec 02, 2020
Last update date Dec 02, 2023
Contact name Barbara Hummel
Organization name Max Planck Institute of Immunobiology and Epigenetics
Street address Stübeweg 51
City Freiburg
ZIP/Postal code 79108
Country Germany
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (36)
GSM4952840 ChIPseq_Covid_24h_rep1_581_Pol2
GSM4952841 ChIPseq_Covid_24h_rep1_H3K27Ac
GSM4952842 ChIPseq_Covid_24h_rep1_Input
This SubSeries is part of SuperSeries:
GSE162495 SARS-CoV2 causes host transcriptional attenuation through an epigenetic pathway.
BioProject PRJNA682046
SRA SRP295488

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE162492_RAW.tar 3.0 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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