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GEO accession:
Series GSE162492
Query DataSets for GSE162492
Status
Public on Dec 02, 2023
Title
ChIP-seq in Calu3 cells upon SARS-CoV2 infection
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Summary
This study addresses the question how host cells transcriptionally respond to SARS-CoV2 infection.
Overall design
Calu3 cells were infected with Influenza or SARS CoV-2 virus for various time points before harvesting them for RNA and chromatin profiling.
Contributor(s)
Weigang S
,
Kochs G
,
Schwemmle M
,
Rawat P
,
Hummel B
,
Sawarkar R
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Submission date
Dec 02, 2020
Last update date
Dec 02, 2023
Contact name
Barbara Hummel
Organization name
Max Planck Institute of Immunobiology and Epigenetics
Street address
Stübeweg 51
City
Freiburg
ZIP/Postal code
79108
Country
Germany
Platforms (1)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (36)
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GSM4952840
ChIPseq_Covid_24h_rep1_581_Pol2
GSM4952841
ChIPseq_Covid_24h_rep1_H3K27Ac
GSM4952842
ChIPseq_Covid_24h_rep1_Input
GSM4952843
ChIPseq_Covid_24h_rep2_581_Pol2
GSM4952844
ChIPseq_Covid_24h_rep2_H3K27Ac
GSM4952845
ChIPseq_Covid_24h_rep2_Input
GSM4952846
ChIPseq_Covid_6h_rep1_581_Pol2
GSM4952847
ChIPseq_Covid_6h_rep1_H3K27Ac
GSM4952848
ChIPseq_Covid_6h_rep1_Input
GSM4952849
ChIPseq_Covid_6h_rep2_581_Pol2
GSM4952850
ChIPseq_Covid_6h_rep2_H3K27Ac
GSM4952851
ChIPseq_Covid_6h_rep2_Input
GSM4952852
ChIPseq_Uninf_24h_rep1_581_Pol2
GSM4952853
ChIPseq_Uninf_24h_rep1_H3K27Ac
GSM4952854
ChIPseq_Uninf_24h_rep1_Input
GSM4952855
ChIPseq_Uninf_24h_rep2_581_Pol2
GSM4952856
ChIPseq_Uninf_24h_rep2_H3K27Ac
GSM4952857
ChIPseq_Uninf_24h_rep2_Input
GSM4952858
ChIPseq_Uninf_6h_rep1_581_Pol2
GSM4952859
ChIPseq_Uninf_6h_rep1_H3K27Ac
GSM4952860
ChIPseq_Uninf_6h_rep1_Input
GSM4952861
ChIPseq_Uninf_6h_rep2_581_Pol2
GSM4952862
ChIPseq_Uninf_6h_rep2_H3K27Ac
GSM4952863
ChIPseq_Uninf_6h_rep2_Input
GSM4952864
ChIPseq_WSN_24h_rep1_581_Pol2
GSM4952865
ChIPseq_WSN_24h_rep1_H3K27Ac
GSM4952866
ChIPseq_WSN_24h_rep1_Input
GSM4952867
ChIPseq_WSN_24h_rep2_581_Pol2
GSM4952868
ChIPseq_WSN_24h_rep2_H3K27Ac
GSM4952869
ChIPseq_WSN_24h_rep2_Input
GSM4952870
ChIPseq_WSN_6h_rep1_581_Pol2
GSM4952871
ChIPseq_WSN_6h_rep1_H3K27Ac
GSM4952872
ChIPseq_WSN_6h_rep1_Input
GSM4952873
ChIPseq_WSN_6h_rep2_581_Pol2
GSM4952874
ChIPseq_WSN_6h_rep2_H3K27Ac
GSM4952875
ChIPseq_WSN_6h_rep2_Input
This SubSeries is part of SuperSeries:
GSE162495
SARS-CoV2 causes host transcriptional attenuation through an epigenetic pathway.
Relations
BioProject
PRJNA682046
SRA
SRP295488
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE162492_RAW.tar
3.0 Gb
(http)
(custom)
TAR (of BW)
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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