NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE162821 Query DataSets for GSE162821
Status Public on Dec 09, 2020
Title Higher-order chromatin structures of chromosomally-integrated HHV-6A predict Integration Sites
Organisms Homo sapiens; Human betaherpesvirus 6; Human betaherpesvirus 6A
Experiment type Other
Expression profiling by high throughput sequencing
Summary We used 4C sequencing technology for high-throughput profiling of HHV6A integration in both HEK293T cells and SMC cells. We identified genome-wide host-virus and virus-virus interactions profiles.
 
Overall design Identification of HHV6A integration sites as well as virus-virus and host-virus interactions.
 
Contributor(s) Mariani M, Zimmerman C, Hasenohr E, Dest A, Rodriguez P, Richman A, Flamand L, Kaufer B, Frietze S
Citation(s) 33718266
BioProject PRJNA665995
Submission date Dec 07, 2020
Last update date Apr 27, 2021
Contact name Seth Frietze
E-mail(s) seth.frietze@med.uvm.edu
Phone 8026563811
Organization name University of Vermont
Department Biomedical and Health Sciences
Lab Frietze Lab
Street address 106 Carrigan Drive
City Burlington
State/province Vermont
ZIP/Postal code 05452
Country USA
 
Platforms (3)
GPL25751 Illumina HiSeq 2000 (Homo sapiens; Human betaherpesvirus 6A)
GPL29481 MinION (Homo sapiens; Human betaherpesvirus 6A)
GPL29482 MinION (Homo sapiens; Human betaherpesvirus 6)
Samples (7)
GSM4962443 iciHHV-6A_vp
GSM4962444 ciHHV-6A_vp
GSM4962445 iciHHV-6A_vp_titration
Relations
SRA SRP285542

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE162821_RAW.tar 324.7 Mb (http)(custom) TAR (of BED, BEDGRAPH, BW, NARROWPEAK, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap