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Status |
Public on Dec 09, 2020 |
Title |
Higher-order chromatin structures of chromosomally-integrated HHV-6A predict Integration Sites |
Organisms |
Homo sapiens; Human betaherpesvirus 6; Human betaherpesvirus 6A |
Experiment type |
Other Expression profiling by high throughput sequencing
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Summary |
We used 4C sequencing technology for high-throughput profiling of HHV6A integration in both HEK293T cells and SMC cells. We identified genome-wide host-virus and virus-virus interactions profiles.
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Overall design |
Identification of HHV6A integration sites as well as virus-virus and host-virus interactions.
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Contributor(s) |
Mariani M, Zimmerman C, Hasenohr E, Dest A, Rodriguez P, Richman A, Flamand L, Kaufer B, Frietze S |
Citation(s) |
33718266 |
BioProject |
PRJNA665995 |
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Submission date |
Dec 07, 2020 |
Last update date |
Apr 27, 2021 |
Contact name |
Seth Frietze |
E-mail(s) |
seth.frietze@med.uvm.edu
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Phone |
8026563811
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Organization name |
University of Vermont
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Department |
Biomedical and Health Sciences
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Lab |
Frietze Lab
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Street address |
106 Carrigan Drive
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City |
Burlington |
State/province |
Vermont |
ZIP/Postal code |
05452 |
Country |
USA |
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Platforms (3) |
GPL25751 |
Illumina HiSeq 2000 (Homo sapiens; Human betaherpesvirus 6A) |
GPL29481 |
MinION (Homo sapiens; Human betaherpesvirus 6A) |
GPL29482 |
MinION (Homo sapiens; Human betaherpesvirus 6) |
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Samples (7)
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Relations |
SRA |
SRP285542 |