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Series GSE163058 Query DataSets for GSE163058
Status Public on Aug 10, 2021
Title Genome-wide ChIP-Seq profiling of a wild-type and a C-terminally truncated mutant of HMR
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Analysis of genome-wide chromatin binding upon overexpression of full length (FL) or C-terminal truncated (dC) HMR in Drosophila SL2 cells
 
Overall design Using Drosophila SL2 cells transfected either with full length (FL) or C-terminal truncated (dC) FLAG-HMR, we induced overxpression of the HMR protein and generated genome-wide binding profiles by performing ChIP-Seq with anti-FLAG antibody (n = 5) or with anti-HMR antibody (n=4).
 
Contributor(s) Lukacs A, Schauer T, Imhof A
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Submission date Dec 11, 2020
Last update date Aug 12, 2021
Contact name Tamas Schauer
E-mail(s) tamas.schauer@helmholtz-munich.de
Organization name Helmholtz Zentrum München
Department Institute of Epigenetics and Stem Cells
Street address Feodor-Lynen-Straße 21
City Munich
ZIP/Postal code 81377
Country Germany
 
Platforms (1)
GPL13304 Illumina HiSeq 2000 (Drosophila melanogaster)
Samples (28)
GSM4971359 AL02 - Hmr_Flag_deltaC_induced
GSM4971360 AL03 - Hmr_Flag_FL_induced
GSM4971361 AL05 - Hmr_Flag_FL_induced
Relations
BioProject PRJNA684573
SRA SRP299011

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE163058_RAW.tar 3.8 Gb (http)(custom) TAR (of BED, BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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