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Series GSE163612 Query DataSets for GSE163612
Status Public on Oct 29, 2022
Title RNA-seq of injured mouse hearts depleted for myofibroblast Yap and Wwtr1
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary A myofibroblast specific tamoxifen inducible Cre was used to assess the role of Yap and Wwtr1 in the mouse heart after myocardial infarction
 
Overall design We implemented a Cre-lox system whereby inducible Cre expressed under the myofibroblast specific Periostin promoter is crossed with Yap and Wwtr1 floxed animals, facilitating inducible depletion of Yap (both alleles) and Wwtr1 (one allele). Mice were siblings with floxed Yap/Wwtr1 alleles and either a copy of MerCreMer under the endogenous periostin promote or wildtype Periostin. Permenant ligation of the left anterior descending artery was used to produce a surgical myocardial infarction. Mice were administered tamoxifen citrate diet ad libitum immediately after surgery to promote excession of myofibroblast yap and left ventricles were collected 4 days post injury.
 
Contributor(s) Flinn MA, Patterson M, CO'Meara C
Citation(s) 36998974
Submission date Dec 21, 2020
Last update date Apr 06, 2023
Contact name Michael Andrew Flinn
Organization name Medical College of Wisconsin
Department Physiology
Lab O'Meara Lab
Street address 8701 W Watertown Plank Rd
City Wauwatosa
State/province WI
ZIP/Postal code 53226
Country USA
 
Platforms (1)
GPL28457 DNBSEQ-G400 (Mus musculus)
Samples (6)
GSM4982784 Cre positive rep1
GSM4982785 Cre positive rep2
GSM4982786 Cre positive rep3
This SubSeries is part of SuperSeries:
GSE163617 RNA-seq of injured mouse hearts depleted for myofibroblast Yap or Yap and Wwtr1
Relations
BioProject PRJNA686945
SRA SRP298705

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE163612_gene_diff.txt.gz 524.3 Kb (ftp)(http) TXT
GSE163612_gene_expression.txt.gz 1.2 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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