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Series GSE163838 Query DataSets for GSE163838
Status Public on Dec 01, 2021
Title mRNA vaccine efficacy in a severe COVID-19 model: attenuated activation of pulmonary immune cells after the challenge
Organism Mesocricetus auratus
Experiment type Expression profiling by high throughput sequencing
Summary mRNA-1273, an mRNA-based vaccine for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is efficacious in mouse and non-human primate models of mild COVID-19. Hamsters exhibit more severe clinical disease from SARS-CoV-2, making it an important model to evaluate vaccine efficacy. Here we show that mock-vaccine treated hamsters infected with SARS-CoV-2 show weight loss and pulmonary infection with pathological changes and increased activated interstitial macrophages and other immune cell types. Prime-boost administration of mRNA-1273 elicited dose-independent robust binding and neutralizing antibodies, ameliorated weight loss and suppressed virus replication in the upper and lower airways. Vaccination largely prevented pulmonary pathological changes, antiviral immune cell activation and changes in cell type composition although increases in some immune cell types and activation of regulatory pathways were found and coincided with an anamnestic antibody response. The results characterize unexpected pulmonary cellular responses to SARS-CoV-2 in vaccinated animals that were shared but greatly attenuated, when compared to mock-vaccinated animals. The efficacy of mRNA-1273 is demonstrated as a two-dose vaccination schedule in a model of severe COVID-19.
 
Overall design Single cell RNA sequencing was conducted on fourteen samples of the Syrian golden hamster lung tissue. Samples were from naïve, mock-vaccinated + SARS-CoV-2 infected, and mRNA-1273 vaccinated + SARS-CoV-2 infected hamsters.
 
Contributor(s) Meyer M, Wang Y, Edwards D, Smith GR, Rubenstein AB, Ramanathan P, Mire CE, Pietzsch C, Chen X, Ge Y, Cheng WS, Henry C, Woods A, Ma LZ, Stewart-Jones G, Bock KW, Minai M, Nagata BM, Periasamy S, Shi PY, Graham BS, Moore IN, Ramos I, Troyanskaya OG, Zaslavsky E, Carfi A, Sealfon SC, Bukreyev A
Citation(s) 34449440
Submission date Dec 24, 2020
Last update date Dec 03, 2021
Contact name Aliza Rubenstein
E-mail(s) aliza.rubenstein@mssm.edu
Organization name Icahn School of Medicine at Mount Sinai
Street address 1 Gustave L. Levy Pl
City Manhattan
State/province NY
ZIP/Postal code 10029
Country USA
 
Platforms (1)
GPL28997 Illumina NovaSeq 6000 (Mesocricetus auratus)
Samples (14)
GSM4988085 VI1
GSM4988086 VI2
GSM4988087 VI3
Relations
BioProject PRJNA687740
SRA SRP299282

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Supplementary file Size Download File type/resource
GSE163838_RAW.tar 621.3 Mb (http)(custom) TAR (of H5, TAR)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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