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Series GSE163902 Query DataSets for GSE163902
Status Public on Dec 28, 2020
Title Multipathogen analysis of IgA and IgG antigen specificity for selected pathogens in milk produced by women from diverse geographical regions: The INSPIRE Study [IgG]
Platform organisms Bordetella pertussis; Staphylococcus aureus; Streptococcus sp. 'group B'; Mycobacterium tuberculosis; Plasmodium falciparum; Onchocerca volvulus; Yellow fever virus; Dengue virus; Human immunodeficiency virus; Respiratory syncytial virus; Chikungunya virus; Zika virus
Sample organism Homo sapiens
Experiment type Protein profiling by protein array
Summary Breastfeeding provides defense against infectious disease during early life. The mechanisms underlying this protection are complex but likely include the vast array of immune cells and components, such as immunoglobulins, in milk. Simply characterizing the concentrations of these bioactives, however, provides only limited information regarding their potential relationships with disease risk in the recipient infant. Rather, understanding pathogen and antigen specificity profiles of milk-borne immunoglobulins might lead to a more complete understanding of how maternal immunity impacts infant health and wellbeing. Milk produced by women living in 11 geographically dispersed populations was applied to a protein microarray containing antigens from 16 pathogens, including diarrheagenic E. coli, Shigella spp., Salmonella enterica serovar Typhi, Staphylococcus aureus, Streptococcus pneumoniae, Mycobacterium tuberculosis and other pathogens of global health concern, and specific IgA and IgG binding was measured. Our analysis identified novel disease-specific antigen responses and suggests that some IgA and IgG responses vary substantially within and among populations. Patterns of antibody reactivity analyzed by principal component analysis and differential reactivity analysis were associated with either lower-to-middle-income countries (LMICs) or high-income countries (HICs). Antibody levels were generally higher in LMICs than HICs, particularly for Shigella and diarrheagenic E. coli antigens, although sets of S. aureus, S. pneumoniae, and some M. tuberculosis antigens were more reactive in HICs. Differential responses were typically specific to canonical immunodominant antigens, but a set of nondifferential but highly reactive antibodies were specific to antigens possibly universally recognized by antibodies in human milk. This approach provides a promising means to understand how breastfeeding and human milk protect (or do not protect) infants from environmentally relevant pathogens. Furthermore, this approach might lead to interventions to boost population-specific immunity in at-risk breastfeeding mothers and their infants.
 
Overall design Human breast milk samples were probed on Antigen Discovery Inc. Multipathogen (Gen-1) Protein Microarrays for detection of antigen-specific IgG binding. This investigation was conducted as part of the “INSPIRE” study designed to characterize and compare complex carbohydrate and microbial community structure in milk produced by relatively healthy women around the globe. Briefly, women had to be healthy; breastfeeding or pumping at least 5 times daily; self-reported-healthy and nursing relatively healthy infants; ≥ 18 yr of age; and generally between 1 and 3 mo postpartum. Our 11 cohorts were drawn from 8 countries: rural and urban Ethiopia (ETR and ETU, respectively), rural and urban The Gambia (GBR and GBU, respectively), Ghana (GN), Kenya (KE), Peru (PE), Spain (SP), Sweden (SW) and the United States [Washington (USW) and California (USC)]. Ethics approvals were obtained for all procedures from each participating institution, with overarching approval from the Washington State University Institutional Review Board (#13264). A total of 413 women were enrolled in the study, and milk was collected from 412 of them. Here, we report data obtained from milk collected from 404 women as follows: ETR (n = 38), ETU (n = 40), GBR (n = 40), GBU (n = 40), GN (n = 40), KE (n = 42), PE (n = 43), SP (n = 41), SW (n = 24), USC (n = 15), USW (n = 41).
 
Contributor(s) McGuire MK, Randall AZ, Seppo AE, Järvinen KM, Meehan CL, Gindola D, Williams JE, Sellen DW, Kamau-Mbuthia EW, Kamundia EW, Mbugua S, Moore SE, Prentice AM, Foster JA, Otoo GE, Rodríguez JM, Pareja RG, Bode L, McGuire MA, Campo JJ
Citation(s) 33643297
Submission date Dec 27, 2020
Last update date Mar 30, 2021
Contact name Joseph John Campo
Organization name Antigen Discovery, Inc.
Street address 1 Technology Dr., STE E309
City Irvine
State/province CA
ZIP/Postal code 92618
Country USA
 
Platforms (1)
GPL29530 Antigen Discovery Inc. Multipathogen (Gen 1) Protein Microarray
Samples (402)
GSM4990035 Subject ID: IN.ETR.101_IgG
GSM4990036 Subject ID: IN.ETR.102_IgG
GSM4990037 Subject ID: IN.ETR.103_IgG
This SubSeries is part of SuperSeries:
GSE163903 Multipathogen analysis of IgA and IgG antigen specificity for selected pathogens in milk produced by women from diverse geographical regions: The INSPIRE Study
Relations
BioProject PRJNA688096

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE163902_raw_data_IgG.txt.gz 496.3 Kb (ftp)(http) TXT
Processed data included within Sample table

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