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Series GSE164299 Query DataSets for GSE164299
Status Public on Jan 16, 2024
Title Proteome-wide profiling of Transcriptional Machinery on Accessible Chromatin by biotinylated transposon [fractionation]
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary This study introduced a method for directly identifying the transcriptional machinery on accessible chromatin (ATAC-MS) in a proteome scale. The goals of this study are to integrate ATAC-seq with ATAC-MS to investigate the real-time in vivo transcriptional regulatory processes in organisms.
 
Overall design ATAC-seq was applied to identify changes in chromatin accessibility and transcription factors binding motifs in different fractions separated by SAX fractionation.
 
Contributor(s) Ding C, Zhang H
Citation(s) 34678055
Submission date Jan 05, 2021
Last update date Jan 17, 2024
Contact name Haizhu Zhang
E-mail(s) zhz2230@qq.com
Phone 18621062295
Organization name Fudan University
Department Institutes of Biomedical Sciences
Lab He Fuchu Lab
Street address No. 131 Dong'an Road, Xuhui District
City Shanghai
ZIP/Postal code 200032
Country China
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (8)
GSM5006015 FT
GSM5006016 G20
GSM5006017 G100
This SubSeries is part of SuperSeries:
GSE174643 Proteome-wide profiling of Transcriptional Machinery on Accessible Chromatin by biotinylated transposon
Relations
BioProject PRJNA689820
SRA SRP300513

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE164299_RAW.tar 2.9 Mb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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