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Series GSE164475 Query DataSets for GSE164475
Status Public on Jul 14, 2021
Title MYC-mediated early glycolysis negatively regulates proinflammatory responses by controlling IRF4 in inflammatory macrophages
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary MYC activates different metabolic programs in a cell-type and cell-status dependent manner. However, the role of MYC in inflammatory macrophages has not yet been determined. Metabolic and molecular analyses reveal that MYC, but not HIF1, is involved in enhancing early glycolytic flux during inflammatory macrophage polarization. Ablation of MYC decreases lactate production by regulating lactate dehydrogenase (LDH) activity and causes increased inflammatory cytokines by regulating interferon regulatory factor 4 (IRF4) in response to lipopolysaccharide (LPS). Moreover, myeloid-specific deletion of MYC and pharmacological inhibition of MYC/LDH axis enhance inflammation and the bacterial clearance in vivo. These results elucidate the potential role of the MYC/LDH/IRF4 axis in inflammatory macrophages by connecting early glycolysis and inflammatory responses and suggest that modulating early glycolytic flux mediated by the MYC/LDH axis can be utilized to open new avenues for the therapeutic modulation of macrophage polarization to fight against bacterial infection.
 
Overall design For the generation BMDMs, bone marrow cells were flushed from femurs and tibias of mice and cultured at 37oC, 5% CO2 in complete α-MEM medium (10% heat-inactivated defined FBS (HyClone Fisher), penicillin-streptomycin (Invitrogen), and L-glutamine (Invitrogen)) with 5% L929 cell supernatant as conditioned medium (CM) as a source of M-CSF (Englen et al., 1995) after lysis of RBCs using ACK lysis buffer (Invitrogen). Then, the non-adherent cell population was recovered the next day and cultured for three additional days. Final concentration of M-CSF in our culture was 23.3 ng/ml. Cells that remained in suspension were removed by aspiration and attached cells were washed twice with PBS, then re-plated and cultured with complete α-MEM medium with 20 ng/ml human M-CSF. Cells were stimulated with LPS (10ng/ml) for 3 hours.
 
Contributor(s) Park-Min K
Citation(s) 34133930
Submission date Jan 08, 2021
Last update date Jul 14, 2021
Contact name Kyung-Hyun Park-Min
E-mail(s) ParkminK@HSS.EDU, parkmink@gmail.com
Organization name Hospital for Special Surgery
Street address 535 East 70th Street
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Platforms (2)
GPL15103 Illumina HiSeq 1000 (Mus musculus)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (8)
GSM5011743 KP.2622_000_KO_000_CTRL_0h_Rep.1
GSM5011744 KP.2622_000_KO_000_LPS_3h_Rep.1
GSM5011745 KP.2622_000_WT_000_CTRL_0h_Rep.1
Relations
BioProject PRJNA690806
SRA SRP300921

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE164475_GEO_edgeR_counts_2019-03-29.xlsx 3.6 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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