GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE166132 Query DataSets for GSE166132
Status Public on Feb 04, 2021
Title A dual omics approach to evaluate transcriptional and metabolic responses during lipid deprivation in an oyster parasite Perkinsus marinus
Organism Perkinsus marinus
Experiment type Expression profiling by high throughput sequencing
Summary In this study, we explored the metabolic processes of P. marinus under lipid deprived conditions to elucidate the interchanging flux of lipid and carbohydrate metabolism. Though P. marinus can synthesize their own lipids from available nutrients, they display a slower growth in media not supplemented with lipids as opposed to media with lipids. Under these conditions, using transcriptomics, we surprisingly observed evidence of stimulated lipid degradation through increased transcription of two core β-oxidation pathway enzymes.
Overall design We sought to examine the transciptional effects of lipid withdrawal from growth media using RNA seq methodologies.
Contributor(s) Noell K, Pitula J
Citation(s) 33571063
Submission date Feb 03, 2021
Last update date May 07, 2021
Contact name Carrie McCracken
Organization name Institute of Genome
Department Institute for Genome Sciences
Street address 670 W. Baltimore St
City Baltimore
State/province MD
ZIP/Postal code 21201
Country USA
Platforms (1)
GPL29693 Illumina HiSeq 4000 (Perkinsus marinus)
Samples (6)
GSM5062123 Control _A
GSM5062124 Control_B
GSM5062125 Control_D
BioProject PRJNA699315
SRA SRP304612

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE166132_RAW.tar 4.2 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap