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Series GSE166205 Query DataSets for GSE166205
Status Public on Jul 08, 2021
Title sequential DNA affinity purification sequencing (seq-DAP-seq) data of SEP3-AGAPI
Organism Arabidopsis thaliana
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary In this study, we applied sequential DNA affinity purification sequencing (seq-DAP-seq) to identiy genome-wide binding of a heterocomplex formed by two transcription factors of the MADS familly SEP3 and AG(AP1-I) (AG with its I domain switched with that of AP1). We compared the genome wide binding of SEP3-AG(AP1-I) to that of our previously published SEP3-AG data
 
Overall design We compared the genome wide binding of SEP3-AG(AP1-I) to that of our previously published SEP3-AG data
 
Contributor(s) Lai X, Blanc-Mathieu R, Lucas J, Hugouvieux V, Parcy F, Zubieta C
Citation(s) 34362909
Submission date Feb 04, 2021
Last update date Aug 24, 2021
Contact name Romain BLANC-MATHIEU
E-mail(s) romain.blancmathieu@cea.fr
Organization name CEA
Lab LPCV
Street address 17 Avenue des martyrs
City Grenoble
ZIP/Postal code 38000
Country France
 
Platforms (1)
GPL17970 Illumina MiSeq (Arabidopsis thaliana)
Samples (3)
GSM5065814 SEP3-AG(API-I) seq-DAP-seq rep1
GSM5065815 SEP3-AG(API-I) seq-DAP-seq rep2
GSM5065816 SEP3-AG(API-I) seq-DAP-seq rep3
Relations
BioProject PRJNA699584
SRA SRP304770

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE166205_SEP3AGiAP1_seqDAPseq.bed.gz 28.9 Kb (ftp)(http) BED
GSE166205_SEP3AGiAP1_seqDAPseq.bedgraph.gz 335.8 Mb (ftp)(http) BEDGRAPH
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Raw data are available in SRA
Processed data are available on Series record

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