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| Status |
Public on Nov 03, 2021 |
| Title |
Bulk RNA sequencing on sorted blood cells from Drosophila lymph glands [PL iCC mCC bulk RNA-Seq] |
| Organism |
Drosophila melanogaster |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We report the use of bulk mRNA sequencing on FACS-sorted blood cells to identify new and unique genetic markers for each major differentiated cell type of the Drosophila lymph gland. We used flow cytomotery in a wild-type genetic background whihc contains two fluorescent reporters that allow for the separation of 3 distinct populations. Plasmatcytes express the markers Hml, Pxn, vkg, Col4a1, and NimC1 , while crystal cells are markered by expression of hnt, lz, ProPO. mCC has higher expression of ProPO relitive to iCC, but lower expression of Hml and DsRed. We identified novel markers that are differentially expressed in each of the three major differentiated blood cell populations (PL, iCC, and mCC) that have been useful to definetely identify populations in scRNA-Seq and give information about transcript isoforms in each of the distinct populations.
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| |
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| Overall design |
Examination of mRNA expression in sorted blood cell populations
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| |
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| Contributor(s) |
Girard JR, Goins LM, Vuu DM, Banerjee U |
| Citation(s) |
34713801 |
| |
| Submission date |
Mar 12, 2021 |
| Last update date |
Nov 03, 2021 |
| Contact name |
Juliet Girard |
| E-mail(s) |
julietgirard@gmail.com
|
| Organization name |
University of California Los Angeles
|
| Street address |
610 Charles E Young Dr E
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL25244 |
Illumina NovaSeq 6000 (Drosophila melanogaster) |
|
| Samples (12)
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| This SubSeries is part of SuperSeries: |
| GSE168823 |
Paths and Pathways that Generate Cell-Type Heterogeneity and Developmental Progression in Hematopoiesis |
|
| Relations |
| BioProject |
PRJNA714093 |
| SRA |
SRP310430 |
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