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| Status |
Public on Dec 31, 2009 |
| Title |
Expression analysis of wild type Fusarium verticillioides cultured in liquid media |
| Organism |
Fusarium verticillioides |
| Experiment type |
Expression profiling by array
|
| Summary |
Investigation of whole genome gene expression level changes over time of Fusarium verticillioides wild-type in liquid fumonisin inducing media (GYAM).
Fusarium verticillioides produces a polyketide derived mycotoxin, fumonsin, over time in liquid media (Proctor et al, Co-expression of 15 contiguous genes delineates a fumonisin biosynthetic gene cluster in Gibberella moniliformis, Fungal Genetics and Biology, 38:237-249).
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| Overall design |
A twelve chip study using total RNA recovered from twelve wild type cultures of Fusarium verticillioides. Each chip measures the expression level of 13,288 genes with thirteen 60-mer probe pairs per gene.
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| Contributor(s) |
Butchko RA, Proctor RH, Brown DW |
| Citation(s) |
21116630 |
| |
| Submission date |
Jun 30, 2009 |
| Last update date |
Mar 21, 2012 |
| Contact name |
Robert Butchko |
| E-mail(s) |
robert.butchko@ars.usda.gov, rbutchko@aggienetwork.com
|
| Phone |
309-681-6073
|
| Organization name |
U.S. Dept. of Agriculture
|
| Street address |
1815 N. University St.
|
| City |
Peoria |
| State/province |
IL |
| ZIP/Postal code |
61606 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL8781 |
NimbleGen-Fusarium verticillioides-13K genes-60-mer-v1 |
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| Samples (12)
|
| GSM423658 |
F verticillioides total RNA_24 hr_rep1 |
| GSM423659 |
F verticillioides total RNA_24 hr_rep2 |
| GSM423660 |
F verticillioides total RNA_24 hr_rep3 |
| GSM423661 |
F verticillioides total RNA_48 hr_rep1 |
| GSM423662 |
F verticillioides total RNA_48 hr_rep2 |
| GSM423663 |
F verticillioides total RNA_48 hr_rep3 |
| GSM423664 |
F verticillioides total RNA_72 hr_rep1 |
| GSM423665 |
F verticillioides total RNA_72 hr_rep2 |
| GSM423666 |
F verticillioides total RNA_72 hr_rep3 |
| GSM423667 |
F verticillioides total RNA_96 hr_rep1 |
| GSM423668 |
F verticillioides total RNA_96 hr_rep2 |
| GSM423669 |
F verticillioides total RNA_96 hr_rep3 |
|
| Relations |
| BioProject |
PRJNA117679 |
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