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Series GSE169144 Query DataSets for GSE169144
Status Public on Oct 13, 2022
Title ACKR3 promotes CXCL12/CXCR4-mediated migration of lymphoma cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Chemotaxis is an essential physiological process, often harnessed by tumors for metastasis. CXCR4, its ligand CXCL12 and the atypical receptor ACKR3 are overexpressed in many human cancers. Interfering with this axis by ACKR3 deletion impairs lymphoma cell migration towards CXCL12. Here, we propose a model of how ACKR3 controls the migration of the diffused large B-cell lymphoma VAL cells in vitro and in vivo in response to CXCL12. VAL cells expressing full-length ACKR3, but not a truncated version missing the C-terminus, can support the migration of VAL cells lacking ACKR3 (VAL-ko) when allowed to migrate together. This migration of VAL-ko cells is pertussis toxin-sensitive suggesting the involvement of a Gi-protein coupled receptor. RNAseq analysis indicate the expression of chemotaxis-mediating LTB4 receptors in VAL cells. We found that LTB4 acts synergistically with CXCL12 in stimulating the migration of VAL cells. Pharmacologic or genetic inhibition of BLT1R markedly reduces chemotaxis towards CXCL12 suggesting that LTB4 enhances in a contact-independent manner the migration of lymphoma cells. The results unveil a novel mechanism of cell-to-cell-induced migration of lymphoma.
 
Overall design As control groups, ACKR3 WT VAL and ACKR3 KO VAL were considerated. Transcriptome of the control groups were compared with IgM+ ACKR3+ and IgM- ACKR3- cells, IgM KO cells and CXCL12 and CXCL11_12 stimulated cells. In total there are 14 samples with 5 biological replicates each.
 
Contributor(s) Antonello P, Pizzagalli DU, Foglierini M, Melgrati S, Radice E, Thelen S, Thelen M
Citation(s) 36713377
Submission date Mar 18, 2021
Last update date Feb 08, 2023
Contact name Mathilde Foglierini
Organization name Institute for Research in Biomedicine
Street address Via Vincenzo Vela 6
City Bellinzona
ZIP/Postal code 6500
Country Switzerland
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (70)
GSM5176836 ACKR3-KO rep1
GSM5176837 ACKR3-KO rep2
GSM5176838 ACKR3-KO rep3
Relations
BioProject PRJNA715443
SRA SRP311195

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Supplementary file Size Download File type/resource
GSE169144_normalized_counts.tsv.gz 7.2 Mb (ftp)(http) TSV
GSE169144_raw_counts.tsv.gz 1.5 Mb (ftp)(http) TSV
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Raw data are available in SRA
Processed data are available on Series record

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