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Series GSE171457 Query DataSets for GSE171457
Status Public on Apr 06, 2021
Title Multipotent progenitors and hematopoietic stem cells arise independently from hemogenic endothelium in the mouse embryo
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary During embryogenesis, waves of hematopoietic progenitors develop from hemogenic endothelium (HE) prior to the emergence of self-renewing hematopoietic stem cells (HSC). Although previous studies have shown that yolk sac-derived erythromyeloid progenitors and HSC emerge from distinct populations of HE, it remains unknown whether the earliest lymphoid-competent progenitors, multipotent progenitors, and HSC originate from common HE. Here we demonstrate by clonal assays and single cell transcriptomics that rare HE with functional HSC potential in the early murine embryo are distinct from more abundant HE with multilineage hematopoietic potential that fail to generate HSC. Specifically, HSC-competent HE are characterized by expression of CXCR4 surface marker and by higher expression of genes tied to arterial programs regulating HSC dormancy and self-renewal. Together, these findings suggest a revised model of developmental hematopoiesis in which the initial populations of multipotent progenitors and HSC arise independently from HE with distinct phenotypic and transcriptional properties.
 
Overall design single cell RNA-sequencing (10X Genomics platform) of murine E9-9.5 P-Sp/AGM-derived FACS-isolated VE-Cadherin+CD61+EPCR+ cells.
 
Contributor(s) Hadland B
Citation(s) 34525376
NIH grant(s)
Grant ID Grant title Affiliation Name
K08 HL140143 Functional and transcriptional analysis of embryonic hematopoietic stem cell development at the single cell level FRED HUTCHINSON CANCER RESEARCH CENTER Brandon K Hadland
RC2 DK114777 Niche signals in HSC genesis FRED HUTCHINSON CANCER RESEARCH CENTER IRWIN D BERNSTEIN
Submission date Apr 05, 2021
Last update date Sep 25, 2021
Contact name Brandon Hadland
E-mail(s) bhadland@fredhutch.org
Organization name Fred Hutchinson Cancer Research Center
Street address 1100 Fairview Avenue N., D2-115, P.O. Box 19024
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (2)
GSM5225898 E9 P-Sp V+61+E+ sort
GSM5225899 E9.5 P-Sp V+61+E+ sort
Relations
BioProject PRJNA719726
SRA SRP313440

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE171457_RAW.tar 48.3 Mb (http)(custom) TAR (of MTX, RDS, TSV)
GSE171457_Sample1-2_P.RDS.gz 29.7 Mb (ftp)(http) RDS
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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