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Series GSE171563 Query DataSets for GSE171563
Status Public on Apr 02, 2022
Title Gene expression profile of hematopoietic stem cells from mutCALR transgenice mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Transcriptome data of HSCs (Hematopoietic stem cells - LSKs) sorted from the bone marrow of vavCRE (wildtype) and CALRdel52 fl/fl; vavCre (mutCALR homozygous) mice
 
Overall design 200 cells/sample sorted into lysis buffer of a 96 well plate and full length mRNA-sequencing (SMART-seq) was performed. Reads from the same mouse were pooled together. Three mice/genotype were used for the experiment.
 
Contributor(s) Kralovics R
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Apr 06, 2021
Last update date Apr 02, 2022
Contact name Christoph Bock
E-mail(s) cbock@cemm.oeaw.ac.at
Organization name CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Street address Lazarettgasse 14
City Vienna
ZIP/Postal code 1090
Country Austria
 
Platforms (1)
GPL21493 Illumina HiSeq 3000 (Mus musculus)
Samples (36)
GSM5227248 Wildtype_1_1
GSM5227249 Wildtype_1_2
GSM5227250 Wildtype_1_3
Relations
BioProject PRJNA720097
SRA SRP313665

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE171563_rnaseq_deseq_BSF_0637_counts_raw.tsv.gz 1.2 Mb (ftp)(http) TSV
GSE171563_rnaseq_deseq_BSF_0637_fpkms.tsv.gz 2.3 Mb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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