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Series GSE17221 Query DataSets for GSE17221
Status Public on Aug 31, 2009
Title Rapid Identification of Bacterial Pathogens using a PCR- and Microarray-Based Assay
Platform organisms Acinetobacter baumannii; Neisseria meningitidis; Klebsiella pneumoniae; Haemophilus influenzae; Staphylococcus aureus; Staphylococcus epidermidis; Streptococcus agalactiae; Streptococcus pneumoniae; Streptococcus pyogenes; Enterococcus faecalis; Enterococcus faecium; Listeria monocytogenes
Sample organisms Homo sapiens; unidentified
Experiment type Other
Summary A method based on a modified broad-range PCR and an oligonucleotide microarray for the simultaneous detection and identification of 12 bacterial pathogens at the species level.
 
Overall design The feasibility of this assay in routine diagnostic testing was evaluated using 146 blood culture positive and 40 blood culture negative samples.
The processed data are composed of ORGANISM NAME or NEGATIVE answer depending if the pathogen is detected in the sample or not. See supplementary file linked below.
 
Contributor(s) Jarvinen A, Maki M
Citation(s) 19664269
Submission date Jul 21, 2009
Last update date Mar 21, 2012
Contact name Anna-Kaarina Jarvinen
Organization name Mobidiag
Street address Biomedicum Helsinki 2U, Tukholmankatu 8
City Helsinki
ZIP/Postal code FIN-00290
Country Finland
 
Platforms (1)
GPL8891 Prove-it Bacteria v 0.1
Samples (195)
GSM431211 19544080
GSM431212 19544099
GSM431213 19544098
Relations
BioProject PRJNA119185

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE17221_processed_data.txt.gz 922 b (ftp)(http) TXT
Processed data are available on Series record
Processed data provided as supplementary file

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