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Series GSE172423 Query DataSets for GSE172423
Status Public on Apr 21, 2021
Title Transcriptional profiling of human genital skin biopsies at lesion, 2- and 8-weeks post healing and contra-lateral control genital skin biopsies during recurrent HSV-2 infection
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Analysis of host response at the gene expression level during lesion and post healing periods (2- & 8-weeks after HSV-2 reactivation induced lesion is resolved). We would like to get a comprehensive overview on host gene expression of genital skin during lesion and post healing periods of recurrent HSV-2 infection as compared to those in control skin.
 
Overall design Total RNA were extracted from tissue slices of genital skin biopsies isolated from patients with recurrent HSV-2 infection using PicoPure kits (Thermo Scientific). cDNA were amlified and biotin labled using NuGEN kit, and hybridized to Illumina beadarrays (HT-12 v4).
 
Contributor(s) Peng T
Citation(s) 34552595
Submission date Apr 20, 2021
Last update date Sep 29, 2021
Contact name Tao Peng
E-mail(s) tpeng@u.washington.edu
Phone 206-667-5861
Organization name University of Washington
Department Medicine
Street address 1100 Fairview Ave N/FHCRC/E5-110
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platforms (1)
GPL10904 Illumina HumanHT-12 V4.0 expression beadchip (gene symbol)
Samples (104)
GSM5255780 Pt1_lesion [200757770053_A]
GSM5255781 Pt2_lesion [200757770053_B]
GSM5255782 Pt1_2wks [200757770053_E]
Relations
BioProject PRJNA723285

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE172423_ILMN_human_HT12_v4_406_NO_normalization_v2.txt.gz 23.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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