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Series GSE172562 Query DataSets for GSE172562
Status Public on Apr 22, 2021
Title ATAC-seq from embryonic facial prominence (ENCSR261ICG)
Project Mouse ENCODE
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ATAC-seq on embryonic e15.5 mouse embryonic facial prominence

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR261ICG/
 
Citation(s) 22955616
BioProject PRJNA63471
Submission date Apr 21, 2021
Last update date May 07, 2021
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (2)
GSM5258359 ATAC-seq from embryonic facial prominence (ENCLB931TGU)
GSM5258360 ATAC-seq from embryonic facial prominence (ENCLB741QPR)

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE172562_ENCFF023UGO_conservative_IDR_thresholded_peaks_mm10.bed.gz 835.3 Kb (ftp)(http) BED
GSE172562_ENCFF059HOV_fold_change_over_control_mm10.bigWig 1.0 Gb (ftp)(http) BIGWIG
GSE172562_ENCFF096IIS_pseudoreplicated_peaks_mm10.bed.gz 2.0 Mb (ftp)(http) BED
GSE172562_ENCFF143TJG_IDR_thresholded_peaks_mm10.bed.gz 857.6 Kb (ftp)(http) BED
GSE172562_ENCFF236LEK_IDR_ranked_peaks_mm10.bed.gz 4.2 Mb (ftp)(http) BED
GSE172562_ENCFF395AGV_IDR_thresholded_peaks_mm10.bigBed 1.9 Mb (ftp)(http) BIGBED
GSE172562_ENCFF575PMI_signal_p-value_mm10.bigWig 764.6 Mb (ftp)(http) BIGWIG
GSE172562_ENCFF581KKJ_IDR_ranked_peaks_mm10.bed.gz 4.1 Mb (ftp)(http) BED
GSE172562_ENCFF641DBN_conservative_IDR_thresholded_peaks_mm10.bigBed 1.9 Mb (ftp)(http) BIGBED
GSE172562_ENCFF890UVS_replicated_peaks_mm10.bigBed 4.8 Mb (ftp)(http) BIGBED
GSE172562_ENCFF933CPT_pseudoreplicated_peaks_mm10.bigBed 4.9 Mb (ftp)(http) BIGBED
GSE172562_ENCFF991HDW_replicated_peaks_mm10.bed.gz 1.9 Mb (ftp)(http) BED
GSE172562_RAW.tar 2.2 Gb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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