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Series GSE172582 Query DataSets for GSE172582
Status Public on Apr 22, 2021
Title ATAC-seq from forebrain (ENCSR273UFV)
Project Mouse ENCODE
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ATAC-seq on embryonic e11.5 mouse forebrain

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR273UFV/
 
Citation(s) 22955616
BioProject PRJNA63471
Submission date Apr 21, 2021
Last update date May 07, 2021
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (2)
GSM5258398 ATAC-seq from forebrain (ENCLB512IZL)
GSM5258399 ATAC-seq from forebrain (ENCLB477WAK)

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE172582_ENCFF006LXW_pseudoreplicated_peaks_mm10.bed.gz 2.7 Mb (ftp)(http) BED
GSE172582_ENCFF116YTQ_IDR_thresholded_peaks_mm10.bigBed 3.1 Mb (ftp)(http) BIGBED
GSE172582_ENCFF163ZSS_IDR_ranked_peaks_mm10.bed.gz 6.1 Mb (ftp)(http) BED
GSE172582_ENCFF176FRR_conservative_IDR_thresholded_peaks_mm10.bigBed 3.1 Mb (ftp)(http) BIGBED
GSE172582_ENCFF326ULQ_signal_p-value_mm10.bigWig 1.2 Gb (ftp)(http) BIGWIG
GSE172582_ENCFF337QKU_conservative_IDR_thresholded_peaks_mm10.bed.gz 1.5 Mb (ftp)(http) BED
GSE172582_ENCFF478OYJ_IDR_ranked_peaks_mm10.bed.gz 6.2 Mb (ftp)(http) BED
GSE172582_ENCFF513GOQ_IDR_thresholded_peaks_mm10.bed.gz 1.5 Mb (ftp)(http) BED
GSE172582_ENCFF564CHC_replicated_peaks_mm10.bigBed 6.2 Mb (ftp)(http) BIGBED
GSE172582_ENCFF582AQM_pseudoreplicated_peaks_mm10.bigBed 6.0 Mb (ftp)(http) BIGBED
GSE172582_ENCFF614CGI_fold_change_over_control_mm10.bigWig 1.4 Gb (ftp)(http) BIGWIG
GSE172582_ENCFF767MGH_replicated_peaks_mm10.bed.gz 2.8 Mb (ftp)(http) BED
GSE172582_RAW.tar 5.3 Gb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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