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Series GSE173379 Query DataSets for GSE173379
Status Public on Apr 27, 2021
Title Next Generation Sequencing Facilitates Quantitative Analysis of CHAA Transcriptomes
Organism Pseudoalteromonas sp. JSTW
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are to compare NGS-derived strain JSTW transcriptome profiling (RNA-seq) and to evaluate protocols for optimal high-throughput data analysis
 
Overall design mRNA profiles of JSTW strain were generated by deep sequencing, in triplicate.
 
Contributor(s) Zan S, Li Z
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Apr 26, 2021
Last update date May 01, 2021
Contact name Shuaijun Zan
E-mail(s) zanxiafei@126.com
Organization name Dalian university and technology
Street address NO.2 of Linggong road
City Dalian
ZIP/Postal code 116024
Country China
 
Platforms (1)
GPL30042 Illumina NovaSeq 6000 (Pseudoalteromonas sp. JSTW)
Samples (9)
GSM5266839 SJ1 (experience group)
GSM5266840 SJ2 (experience group)
GSM5266841 SJ3 (experience group)
Relations
BioProject PRJNA725272
SRA SRP316444

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE173379_RAW.tar 180.0 Kb (http)(custom) TAR (of TXT)
GSE173379_gene.description.txt.gz 1.6 Mb (ftp)(http) TXT
GSE173379_gene.fasta.gz 1.1 Mb (ftp)(http) FASTA
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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