 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Sep 27, 2023 |
| Title |
ac4C-seq of cellular and KSHV transcripts in iSLK-Puro, iSLK-KSHV (i.e. iSLK-RGB), iSLK-KSHV (WT), iSLK-KSHV (ΔNAT10) cells |
| Organisms |
Homo sapiens; Human gammaherpesvirus 8 |
| Experiment type |
Other
|
| Summary |
We used ac4C-seq to detedc cellular and KSHV transcripts in iSLK-Puro, iSLK-KSHV, iSLK-KSHV (WT), iSLK-KSHV (ΔNAT10) cells after after doxycycline and sodium butyrate treatment.
|
| |
|
| Overall design |
Examination of NAT10 dependent KSHV ac4C transcripts in 4 different iSLK cells.
|
| |
|
| Contributor(s) |
Yan Q, Zhou J, Wang Z, Ding X, Ma X, Li W, Jia X, Gao S, Lu C |
| Citation(s) |
37816771 |
| Submission date |
May 10, 2021 |
| Last update date |
Oct 12, 2023 |
| Contact name |
Liuxue Sheng |
| E-mail(s) |
shengliuxue@gmail.com
|
| Organization name |
Nanjing Medical University
|
| Street address |
Tian Yuan East Road
|
| City |
Nanjing |
| State/province |
Jiangsu |
| ZIP/Postal code |
211166 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL30065 |
Illumina NovaSeq 6000 (Homo sapiens; Human gammaherpesvirus 8) |
|
| Samples (24)
|
|
| Relations |
| BioProject |
PRJNA728653 |
| SRA |
SRP319175 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE174161_All.count.txt.gz |
400.1 Kb |
(ftp)(http) |
TXT |
| GSE174161_KO_peak_ann.xls.gz |
171.5 Kb |
(ftp)(http) |
XLS |
| GSE174161_Puro_peak_ann.xls.gz |
139.4 Kb |
(ftp)(http) |
XLS |
| GSE174161_RGB_peak_ann.xls.gz |
108.4 Kb |
(ftp)(http) |
XLS |
| GSE174161_WT_peak_ann.xls.gz |
118.4 Kb |
(ftp)(http) |
XLS |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
|
|
|
|
 |
Less...
More...