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Series GSE174161 Query DataSets for GSE174161
Status Public on Sep 27, 2023
Title ac4C-seq of cellular and KSHV transcripts in iSLK-Puro, iSLK-KSHV (i.e. iSLK-RGB), iSLK-KSHV (WT), iSLK-KSHV (ΔNAT10) cells
Organisms Homo sapiens; Human gammaherpesvirus 8
Experiment type Other
Summary We used ac4C-seq to detedc cellular and KSHV transcripts in iSLK-Puro, iSLK-KSHV, iSLK-KSHV (WT), iSLK-KSHV (ΔNAT10) cells after after doxycycline and sodium butyrate treatment.
Overall design Examination of NAT10 dependent KSHV ac4C transcripts in 4 different iSLK cells.
Contributor(s) Yan Q, Zhou J, Wang Z, Ding X, Ma X, Li W, Jia X, Gao S, Lu C
Citation(s) 37816771
Submission date May 10, 2021
Last update date Oct 12, 2023
Contact name Liuxue Sheng
Organization name Nanjing Medical University
Street address Tian Yuan East Road
City Nanjing
State/province Jiangsu
ZIP/Postal code 211166
Country China
Platforms (1)
GPL30065 Illumina NovaSeq 6000 (Homo sapiens; Human gammaherpesvirus 8)
Samples (24)
GSM5288131 iSLK-puro_rep1-input
GSM5288132 iSLK-puro_rep2-input
GSM5288133 iSLK-puro_rep3-input
BioProject PRJNA728653
SRA SRP319175

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE174161_All.count.txt.gz 400.1 Kb (ftp)(http) TXT
GSE174161_KO_peak_ann.xls.gz 171.5 Kb (ftp)(http) XLS
GSE174161_Puro_peak_ann.xls.gz 139.4 Kb (ftp)(http) XLS
GSE174161_RGB_peak_ann.xls.gz 108.4 Kb (ftp)(http) XLS
GSE174161_WT_peak_ann.xls.gz 118.4 Kb (ftp)(http) XLS
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Raw data are available in SRA
Processed data are available on Series record

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