|
| Status |
Public on May 12, 2021 |
| Title |
The SCP4-STK35/PDIK1L complex is a dual phospho-catalytic signaling dependency in acute myeloid leukemia (RNA-Seq) |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Third-party reanalysis
|
| Summary |
Transcriptome analysis by high throughput sequencing
|
| |
|
| Overall design |
Gene expression profiles in MOLM-13/Cas9+ cells with guideRNA-mediated gene knockouts
|
| |
|
| Contributor(s) |
Polyanskaya SA, Demerdash OE, Klingbeil O, Vakoc CR |
| Citation(s) |
35021089 |
| |
| Submission date |
May 10, 2021 |
| Last update date |
Feb 02, 2022 |
| Contact name |
Sofya A Polyanskaya |
| Organization name |
Cold Spring Harbor Laboratory
|
| Department |
Cancer Center
|
| Lab |
Vakoc Laboratory
|
| Street address |
1 Bungtown Road
|
| City |
Cold Spring Harbor |
| State/province |
NY |
| ZIP/Postal code |
11724 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (12)
|
|
| Relations |
| Reanalysis of |
GSM2794837 |
| Reanalysis of |
GSM2794836 |
| Reanalysis of |
GSM2794841 |
| Reanalysis of |
GSM2794840 |
| Reanalysis of |
GSM2794839 |
| Reanalysis of |
GSM2794838 |
| Reanalysis of |
GSM2944342 |
| Reanalysis of |
GSM2944341 |
| Reanalysis of |
GSM2944348 |
| Reanalysis of |
GSM2944347 |
| Reanalysis of |
GSM2944344 |
| Reanalysis of |
GSM2944343 |
| BioProject |
PRJNA729050 |
| SRA |
SRP319560 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE174169_200701_DeSeq2_MOLM13_dgSTK35_PDIK1L.txt.gz |
498.4 Kb |
(ftp)(http) |
TXT |
| GSE174169_200701_DeSeq2_MOLM13_sgSCP4.txt.gz |
608.0 Kb |
(ftp)(http) |
TXT |
| GSE174169_210203_Kallisto_MOLM13_dgSTK35_PDIK1L_vs_sgROSA_Polyanskaya.csv.gz |
826.7 Kb |
(ftp)(http) |
CSV |
| GSE174169_210203_Kallisto_MOLM13_sgMEF2C_vs_sgNEG_Tarumoto.csv.gz |
836.4 Kb |
(ftp)(http) |
CSV |
| GSE174169_210203_Kallisto_MOLM13_sgMYB_vs_sgROSA_Xu.csv.gz |
864.9 Kb |
(ftp)(http) |
CSV |
| GSE174169_210203_Kallisto_MOLM13_sgSCP4_vs_sgROSA_Polyanskaya.csv.gz |
854.8 Kb |
(ftp)(http) |
CSV |
| GSE174169_210203_Kallisto_MOLM13_sgSIK3_vs_sgNEG_Tarumoto.csv.gz |
775.3 Kb |
(ftp)(http) |
CSV |
| GSE174169_210203_Kallisto_MOLM13_sgTAF12_vs_sgROSA_Xu.csv.gz |
854.3 Kb |
(ftp)(http) |
CSV |
| GSE174169_210311_Salmon_tpm_MOLM13_SCP4_STK35PDIK1L.txt.gz |
774.6 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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