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Series GSE17421 Query DataSets for GSE17421
Status Public on Aug 21, 2009
Title miRNA arrays for LPS-activated Akt1+/+ and Akt1-/- macrophages
Platform organisms Homo sapiens; Mus musculus; Rattus norvegicus
Sample organism Mus musculus
Experiment type Other
Summary MicroRNAs regulated by lipopolysaccharide (LPS) target genes that contribute to the inflammatory phenotype. Here we showed that the protein kinase Akt1, which is activated by LPS, positively regulated miRNAs let-7e, miR-181c but negatively regulated miR-155 and miR-125b. In silico analyses and transfection studies revealed that let-7e repressed Toll-like receptor 4 (TLR4) whereas miR-155 repressed SOCS1, two proteins critical for LPS-driven TLR signalling, which regulate endotoxin sensitivity and tolerance. As a result, Akt1-/- macrophages exhibited increased responsiveness to LPS in culture and Akt1-/- mice did not develop endotoxin tolerance in vivo. Overexpression of let-7e and suppression of miR-155 in Akt1-/- macrophages restored sensitivity and tolerance to LPS in culture and in animals. These results indicate that Akt1 regulates the response of macrophages to LPS by controlling miRNA expression. The data deposited here contain the entire analysis of miRNA profile of Akt1+/+ and Akt1-/- thioglycollate elicited peritoneal macrophages following stimulation with LPS for 3 hours in culture.
 
Overall design Thioglycollate elicited macrophages were cultured in complete DMEM medium, stimulated with LPS for 3 hours and RNA was extracted. Samples were analyzed using Taq-man PCR miRNA arrays (Dana Farber microarray Facility).
 
Contributor(s) Iliopoulos D, Tsichlis PN, Androulidaki A, Tsatsanis C
Citation(s) 19699171
Submission date Jul 30, 2009
Last update date Mar 21, 2012
Contact name Christos Tsatsanis
E-mail(s) tsatsani@med.uoc.gr
Phone +30-2810394833
Organization name University of Crete
Department School of Medicine
Lab Clinical Chemistry
Street address Voutes
City Heraklion
State/province Crete
ZIP/Postal code 71003
Country Greece
 
Platforms (1)
GPL8952 miRNA profile from LPS-treated Akt1-/- macrophages
Samples (4)
GSM434746 Akt1+/+
GSM434747 Akt1-/-
GSM434748 Akt1+/+ LPS
Relations
BioProject PRJNA118905

Fold Difference Akt1+/+ vs Akt1-/- header descriptions
ID_REF
VALUE Fold Difference Akt1+/+ vs Akt1-/-

Data table
ID_REF VALUE
dme-let-7-4373493 0.972190876
hsa-let-7a-4373169 1.026808042
hsa-let-7b-4373168 0.917906112
hsa-let-7c-4373167 0.940503684
hsa-let-7d-4373166 0.951722906
hsa-let-7e-4373165 1.397085679
hsa-let-7f-4373164 0.980792261
hsa-let-7g-4373163 0.971948987
hsa-let-7i-4373162 0.971616907
hsa-miR-100-4373160 1.033954357
hsa-miR-101-4373159 1.005436173
hsa-miR-103-4373158 0.965120175
hsa-miR-106b-4373155 0.961830446
hsa-miR-107-4373154 0.952061385
hsa-miR-10a-4373153 0.955068754
hsa-miR-122a-4373151
hsa-miR-124a-4373150
hsa-miR-125a-4373149 0.986377981
hsa-miR-125b-4373148 1.031947446
hsa-miR-126-4378064 0.993549327

Total number of rows: 362

Table truncated, full table size 10 Kbytes.




Fold Difference LPS-stim. Akt1+/+ vs LPS-stimAkt1-/- header descriptions
ID_REF
VALUE Fold Difference LPS-stim. Akt1+/+ vs LPS-stimAkt1-/-

Data table
ID_REF VALUE
dme-let-7-4373493 0.974441175
hsa-let-7a-4373169 0.984432368
hsa-let-7b-4373168 0.990477426
hsa-let-7c-4373167 0.962475018
hsa-let-7d-4373166 0.949770598
hsa-let-7e-4373165 0.207363517
hsa-let-7f-4373164 0.913894161
hsa-let-7g-4373163 1.027832375
hsa-let-7i-4373162 0.927681194
hsa-miR-100-4373160 0.941560041
hsa-miR-101-4373159 0.954511179
hsa-miR-103-4373158 0.962443663
hsa-miR-106b-4373155 0.989212243
hsa-miR-107-4373154 1.028336905
hsa-miR-10a-4373153 0.960092291
hsa-miR-122a-4373151
hsa-miR-124a-4373150
hsa-miR-125a-4373149 1.039647172
hsa-miR-125b-4373148 2.267264804
hsa-miR-126-4378064 0.913714908

Total number of rows: 362

Table truncated, full table size 10 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary data files not provided
Processed data are available on Series record

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