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| Status |
Public on May 14, 2021 |
| Title |
Transcriptome deep sequencing (RNA-seq) analysis on 9 DPA fibers from wild type and GhWRKY16-RNAi |
| Organism |
Gossypium hirsutum |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To explore the regulation mechanism of GhWRKY16 in fiber development, we performed a transcriptome deep sequencing (RNA-seq) analysis on 9 DPA fibers from wild type and GhWRKY16-RNAi seeds. We identified 2,186 differentially expressed genes (DEGs), consisting of 1,088 upregulated genes and 1,098 downregulated genes Gene ontology (GO) cluster analysis showed that the DEGs regulated by GhWRKY16 are classified in diverse molecular functions, cellular components and biological processes.
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| |
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| Overall design |
9DPA fiber mRNA profiles of wild type and GhWRKY16 RNAi cotton
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| |
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| Contributor(s) |
Wang N, Li Y, Li X |
| Citation missing |
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| |
| Submission date |
May 14, 2021 |
| Last update date |
May 16, 2021 |
| Contact name |
Yang Li |
| E-mail(s) |
liy@mail.ccnu.edu.cn
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| Organization name |
central china normal university
|
| Department |
School of Life Science
|
| Street address |
NO.152 Luoyu Road
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| City |
Wuhan |
| ZIP/Postal code |
430079 |
| Country |
China |
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| Platforms (1) |
| GPL30129 |
Illumina HiSeq 3000 (Gossypium hirsutum) |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA729992 |
| SRA |
SRP319934 |
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