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Series GSE175931 Query DataSets for GSE175931
Status Public on Aug 03, 2021
Title A transcriptional repressor programs gametocytogenesis in human malaria parasites (PfAP2-G5) [WGS-Seq]
Organism Plasmodium falciparum
Experiment type Genome variation profiling by high throughput sequencing
Summary Gametocytogenesis, the process by which malaria parasites produce sexual forms that can infect mosquitoes, is essential for the transmission of malaria. A transcriptional switch of the pfap2-g gene triggers sexual commitment, but how the complex multi-step process is precisely programed remains largely unknown. Here, by systematic functional screening of a panel of ApiAP2 transcription factors, we identify six new apiAP2 members associated with gametocytogenesis in Plasmodium falciparum. Among these, PfAP2-G5 (PF3D7_1139300) was found to be indispensable for gametocytogenesis. This factor suppresses the transcriptional activity of the pfap2-g gene via binding to both the upstream region and exonic gene body, the latter is linked to the maintenance of local heterochromatin structure, thereby preventing initiation of sexual commitment. Removal of this repressive effect through pfap2-g5 knockout disrupts the asexual replication cycle and promotes sexual commitment accompanied by upregulation of pfap2-g expression. However, the gametocytes produced fail to mature fully. Further analyses show that PfAP2-G5 is essential for gametocyte maturation, and causes the down-regulation of pfap2-g and a set of early gametocyte genes activated by PfAP2-G prior to gametocyte development. Collectively, our findings reveal a regulation cascade of gametocyte production in malaria parasites, and provide a new target for transmission blocking interventions.
 
Overall design Parasites were harvested to perform next-generation whole genome sequencing assay using genomic DNA.
 
Contributor(s) Shen S, Shang X, Jiang C, Zhang Q
Citation(s) 34365503
Submission date Jun 01, 2021
Last update date Sep 15, 2021
Contact name Shijun Shen
E-mail(s) xiaoshen19930901@163.com
Phone +86-21-13795384821
Organization name Tongji University
Department Bioninformatics
Lab Jiang Lab
Street address 1239 Siping Road, Shanghai, P.R. China
City Shanghai
State/province Shanghai
ZIP/Postal code 200092
Country China
 
Platforms (1)
GPL26835 HiSeq X Ten (Plasmodium falciparum)
Samples (4)
GSM5351391 pfap2-g5_trun_3D7_WGS-seq
GSM5351392 pfap2-g5_dDBD_3D7_WGS-seq
GSM5351393 pfap2-g5_trun_NF54_WGS-seq
This SubSeries is part of SuperSeries:
GSE149774 A transcriptional repressor programs gametocytogenesis in human malaria parasites (PfAP2-G5)
Relations
BioProject PRJNA734316
SRA SRP322171

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE175931_The_final_SNP_and_InDel_sets_of_each_sample.xlsx 21.4 Kb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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