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Series GSE176219 Query DataSets for GSE176219
Status Public on Oct 31, 2021
Title Transcriptomics of the HPG axis from in vitro or in vivo-produced dairy male calves
Organism Bos taurus
Experiment type Expression profiling by high throughput sequencing
Summary In cattle, two of the most common technologies for embryo production are “in vivo” (MOET) or “in vitro” (IVP). IVP can sometimes impact fetal growth, resulting in large offspring, although most IVP calves are born apparently healthy. However, gene regulation changes in the organs involved in the developmental process in phenotypically normal postnatal calves are unknown and could indicate physiological programming. The objective of this study was to compare the transcriptomic modifications in organs of the hypothalamus-pituitary-gonadal and adrenal (HPGA) axes between IVP and MOET male calves of three months of age. RNA extracted from the HPGA organs samples (n=4 per group) were sequenced through RNAseq. The raw files were subjected to a bioinformatic pipeline to determine differentially expressed genes (FDR<0.05) in IVP versus MOET samples and the KEGG pathways enriched by these genes (FDR < 0.1). Pathways related to the reproductive process (GnRH secretion in hypothalamus, GnRH signaling in pituitary and steroidogenesis in testicle) were stimulated in IVP calves, suggesting an early activation of the HPG axis in male IVP calves when compared to MOET counterparts.
 
Overall design Samples were obtained from the hypothalamus, pituitary, testicle and adrenal from three-month-old IVP calves (n=4) and control MOET calves (n=4).
 
Contributor(s) Rabaglino MB, Bojsen-Møller Secher J, Sirad MA, Hyttel P, Kadarmideen HN
Citation(s) 34460963
Submission date Jun 05, 2021
Last update date Nov 30, 2021
Contact name Maria Belen Rabaglino
E-mail(s) m.b.rabaglino@uu.nl
Organization name Utrecht University
Department Population Health Science
Street address Yalelaan 7
City Utrecht
ZIP/Postal code 3584 CL
Country Netherlands
 
Platforms (1)
GPL28857 DNBSEQ-G400 (Bos taurus)
Samples (32)
GSM5360257 Hypo_3208_IVP
GSM5360258 Hypo_3209_IVP
GSM5360259 Hypo_3213_MOET
Relations
BioProject PRJNA735399
SRA SRP322869

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Supplementary file Size Download File type/resource
GSE176219_GeneCounts_AllOrgans.txt.gz 1.1 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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