NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE176409 Query DataSets for GSE176409
Status Public on Jan 10, 2022
Title RNA sequencing of Hoxb8 yolk sac- and bone marrow-derived
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Progenitor cells of yolk sac and bone marrow origin were transduced with an estrogen receptor Hoxb8 fusion protein to generate stable cell lines. Macrophages were differentiated with M-CSF in the absence of estrogen, and then stimulated with IL-4 or LPS. Hoxb8 progenitor cells and differentiated macrophages were analyzed by RNA sequencing.
 
Overall design RNA profile of YS vs. BM Hoxb8 cell lines (progenitors and differentiated macrophages - unstimulated/ IL4-/ LPS-treated for 5 hours
 
Contributor(s) Schulz C, Elhag S, Stremmel C, Bonin M
Citation(s)
  • Elhag S, Stremmel C, Zehrer A, Plocke J et al. Differences in Cell-Intrinsic Inflammatory Programs of Yolk Sac and Bone Marrow Macrophages. Cells 2021 Dec 17;10(12). PMID: 34944072
Submission date Jun 08, 2021
Last update date Jan 10, 2022
Contact name Tobias Straub
E-mail(s) tstraub@med.uni-muenchen.de
Organization name LMU Munich
Department Biomedical Center, Bioinformatics
Street address Großhadener Str. 9
City Martinsried
ZIP/Postal code 82152
Country Germany
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (24)
GSM5364137 YS differentiated, IL4-treated #1
GSM5364138 BM differentiated, untreated #1
GSM5364139 YS differentiated, untreated #1
Relations
BioProject PRJNA736088
SRA SRP323261

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE176409_Raw_gene_counts_matrix.txt.gz 798.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap
External link. Please review our privacy policy.