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Series GSE178154 Query DataSets for GSE178154
Status Public on Jun 15, 2021
Title Expression data of HNSCC cell lines grown without and with patient-matched CAFs in 3D
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Cancer associated fibroblasts (CAFs) are the major cellular component of the tumor microenvironment and they have been shown to stimulate tumor growth, epithelial-to-mesenchymal transition (EMT), invasion and radio-resistance.
We used microarrays to investigate the influence of CAFs on the gene expression profile of HNSCC cells in 3D co-cultures
 
Overall design HNSCC cells (LK0902, LK0917, LK1108) grown as CAF co-culture in 3D were selected for RNA extraction and hybridization on Affymetrix microarrays.
 
Contributor(s) Wiechec E, Roberg K
Citation(s) 34283070
Submission date Jun 14, 2021
Last update date Aug 11, 2021
Contact name Emilia Wiechec
E-mail(s) emilia.wiechec@liu.se
Organization name Linköping University
Department Biomedical and Clinical Sciences
Street address Sandbäcksgatan 7
City Linköping
ZIP/Postal code 58183
Country Sweden
 
Platforms (1)
GPL17586 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
Samples (6)
GSM5381040 LK0902 cell line grown without CAF in 3D
GSM5381041 LK0917 cell line grown without CAF in 3D
GSM5381042 LK1108 cell line grown without CAF in 3D
Relations
BioProject PRJNA737483

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE178154_RAW.tar 140.2 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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