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Series GSE178527 Query DataSets for GSE178527
Status Public on Sep 30, 2022
Title Genome-wide chromatin accessibility data from cultured human fetal lung tip-derived organoids at different stages of lung development
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Human fetal lung tip cells were purifed from developing human lungs at pseudoglandular and canalicular stages and in vitro cultured as organoids. Chromatin accessibility data for each organoid line at different stages were profiled by ATAC-seq.
 
Overall design Two types of human lung tip organoids of two biological replicates at different stages
 
Contributor(s) Lim K, Tang W, Rawlins EL
Citation(s) 36493780
Submission date Jun 21, 2021
Last update date Jan 02, 2023
Contact name Kyungtae Lim
E-mail(s) kl492@cam.ac.uk
Organization name University of Cambridge
Department The Wellcome Trust/Cancer Research UK Gurdon Institute
Lab Emma Rawlins' group
Street address Tennis Court Road
City Cambridge
ZIP/Postal code CB2 1QN
Country United Kingdom
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (4)
GSM5393366 BRC1915_CS20_P5_ATAC-seq
GSM5393367 13393_CS23_P5_ATAC-seq
GSM5393368 14404_folded_P2_ATAC-seq
This SubSeries is part of SuperSeries:
GSE178529 Acquisition of alveolar fate and differentiation competence by human fetal lung epithelial progenitor cells
Relations
BioProject PRJNA739557
SRA SRP324790

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE178527_ATAC_consensus_narrowPeak.bed.gz 986.4 Kb (ftp)(http) BED
GSE178527_Pseudoglandular_vs_LinPOS_gained_summit.bed.gz 88.9 Kb (ftp)(http) BED
GSE178527_Pseudoglandular_vs_LinPOS_lost_summit.bed.gz 189.0 Kb (ftp)(http) BED
GSE178527_RAW.tar 644.2 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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