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GEO accession:
Series GSE178556
Query DataSets for GSE178556
Status
Public on Jun 22, 2021
Title
Wdr5
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31940490
,
34715053
Submission date
Jun 21, 2021
Last update date
Dec 02, 2021
Contact name
Rajesh C Rao
E-mail(s)
rajeshr@umich.edu
Organization name
University of Michigan
Street address
1000 Wall Street
City
Ann Arbor
State/province
Michigan
ZIP/Postal code
48105
Country
USA
Platforms (1)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (43)
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GSM5393707
ATAC-Seq DKOEV-rep1
GSM5393708
ATAC-Seq DKOEV-rep2
GSM5393709
ATAC-Seq DKOS91KY191F-rep1
GSM5393710
ATAC-Seq DKOS91KY191F-rep2
GSM5393711
ATAC-Seq WT-rep1
GSM5393712
ATAC-Seq WT-rep2
GSM5393713
ATAC-Seq p53KOC9-rep1
GSM5393714
ATAC-Seq p53KOC9-rep2
GSM5393715
ATAC-Seq p53KOH9-rep1
GSM5393716
ATAC-Seq p53KOH9-rep2
GSM5393717
ATAC-Seq DKOWT-rep1
GSM5393718
ATAC-Seq DKOWT-rep2
GSM5393719
ATAC-Seq WT, EB4-rep-1
GSM5393720
ATAC-Seq WT, EB4-rep-2
GSM5393721
ATAC-Seq Wdr5 and p53 double knockout-rep-1
GSM5393722
ATAC-Seq Wdr5 and p53 double knockout-rep-2
GSM5393723
ChIP-Seq DKOWT Input ChIP-seq
GSM5393724
ChIP-Seq DKOWT WDR5 ChIP-seq
GSM5393725
ChIP-Seq DKOWT H3K4me3 ChIP-seq
GSM5393726
ChIP-Seq DKOS91KY191F Input ChIP-seq
GSM5393727
ChIP-Seq DKOS91KY191F WDR5 ChIP-seq
GSM5393728
ChIP-Seq DKOS91KY191F H3K4me3 ChIP-seq
GSM5393741
ChIP-Seq WT day 2 embryoid bodies MAX Cut & Run
GSM5393742
ChIP-Seq Wdr5 KO day 2 embryoid bodies MAX Cut & Run
GSM5393743
ChIP-Seq Wdr5 and p53 double KO day 2 embryoid bodies MAX Cut & Run
GSM5393744
RNA-Seq DKOWT1-rep1
GSM5393745
RNA-Seq DKOWT1-rep2
GSM5393746
RNA-Seq DKOS91KY191F-rep 1
GSM5393747
RNA-Seq DKOS91KY191F-rep 2
GSM5393748
RNA-Seq WTEB4-rep1
GSM5393749
RNA-Seq WTEB4-rep2
GSM5393750
RNA-Seq DKO-A-rep1
GSM5393751
RNA-Seq DKO-A-rep2
GSM5393752
RNA-Seq DKO-B-rep1
GSM5393753
RNA-Seq DKO-B-rep2
GSM5393754
RNA-Seq DKO-EV-rep1
GSM5393755
RNA-Seq DKO-EV-rep2
GSM5393756
RNA-Seq DKO-S91KY191F-rep1
GSM5393757
RNA-Seq DKO-S91KY191F-rep2
GSM5393758
RNA-Seq P53KOC9-rep1
GSM5393759
RNA-Seq P53KOC9-rep2
GSM5393760
RNA-Seq P53KOH9-rep1
GSM5393761
RNA-Seq P53KOH9-rep2
This SuperSeries is composed of the following SubSeries:
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GSE178551
Chromatin accessibility profiling of mouse embryonic stem cells and embryonic bodies using SFEBq differentiation methods upon Wdr5 and P53 deletion with or without WT or mutant hWDR5 rescue
GSE178552
Genome profiling of WDR5 and H3K4me3 binding in mouse embryonic stem cells
GSE178554
Genome profiling of MAX binding in mouse embryonic bodies using SFEBq differentiation methods
GSE178555
Transcriptome of Wdr5 and (or) p53 double knockout ESCs and embryoid bodies
Relations
BioProject
PRJNA739648
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE178556_RAW.tar
9.9 Gb
(http)
(custom)
TAR (of BED, BIGWIG, BW, GTF, NARROWPEAK)
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